RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 TUFMP49411 452 aaKnown RBP13.28□□□□□ -0.28
COL18A1-201ENST00000342220 PIK3R6Q5UE93 754 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 FYB2Q5VWT5 728 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 FAM109BQ6ICB4 259 aaPredicted RBP13.28□□□□□ -0.28
COL18A1-201ENST00000342220 TTC8Q8TAM2 541 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 PSMG2Q969U7 264 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 MYEOVQ96EZ4 313 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 C17orf80Q9BSJ5 609 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 RNPEPL1Q9HAU8 725 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 ZNF510Q9Y2H8 683 aa13.28□□□□□ -0.28
COL18A1-201ENST00000342220 A0A0A0MRY4 1105 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 A0A0G2JND7 137 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 HIDE1A8MVS5 230 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 LPXNO60711 386 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 ERVK-10P10266 1014 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 HAPLN1P10915 354 aaPredicted RBP13.27□□□□□ -0.28
COL18A1-201ENST00000342220 GSTT1P30711 240 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 HECTD3Q5T447 861 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 BHLHA9Q7RTU4 235 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 ZNF461Q8TAF7 563 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 SPATA13Q96N96 652 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 CWH43Q9H720 699 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 ELAC1Q9H777 363 aaKnown RBP13.27□□□□□ -0.28
COL18A1-201ENST00000342220 PPCSQ9HAB8 311 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 SMYD2Q9NRG4 433 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 SCOCQ9UIL1 159 aa13.27□□□□□ -0.28
COL18A1-201ENST00000342220 A0A0D9SEW6 157 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 ABHD14A-ACY1A0A1B0GW23 586 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 F5H5T6 163 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 FUT4P22083 530 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 CORO1AP31146 461 aaKnown RBP13.27□□□□□ -0.29
COL18A1-201ENST00000342220 LRRC6Q86X45 466 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 C12orf76Q8N812 135 aaPredicted RBP13.27□□□□□ -0.29
COL18A1-201ENST00000342220 ATP6V0D2Q8N8Y2 350 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 BANPQ8N9N5 519 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 HMCESQ96FZ2 354 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 DHRS4Q9BTZ2 278 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 CATSPERBQ9H7T0 1116 aa13.27□□□□□ -0.29
COL18A1-201ENST00000342220 A0A0U1RQS6 177 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 CCDC195A0A1B0GUA6 201 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 PRKCGP05129 697 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 ATP6V1C1P21283 382 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 EPHB3P54753 998 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 NTHL1P78549 312 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SEMG2Q02383 582 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 FPGSQ05932 587 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TSNAXIP1Q2TAA8 658 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 MUM1Q2TAK8 710 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 KLHL38Q2WGJ6 581 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 PM20D1Q6GTS8 502 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 CLNKQ7Z7G1 428 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 GBP5Q96PP8 586 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 NUDCD1Q96RS6 583 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 FICDQ9BVA6 458 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 RNF38Q9H0F5 515 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.26□□□□□ -0.295e-10■■□□□ 13.1
COL18A1-201ENST00000342220 THSD7BQ9C0I4 1608 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 E7ESA3 106 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 NDC80O14777 642 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 ENTPD5O75356 428 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TROVE2P10155 538 aaKnown RBP eCLIP13.26□□□□□ -0.297e-8■■■■□ 19.9
COL18A1-201ENST00000342220 GNAZP19086 355 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 MX2P20592 715 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 CALB2P22676 271 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 PDE1BQ01064 536 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 FOXB2Q5VYV0 432 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 APLFQ8IW19 511 aaPredicted RBP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 DDI1Q8WTU0 396 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 MYLIPQ8WY64 445 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 WBP2Q969T9 261 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 AZIN2Q96A70 460 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 FUBP3Q96I24 572 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TOX2Q96NM4 488 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SLX1AQ9BQ83 275 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 FAM124BQ9H5Z6 455 aaPredicted RBP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 DENND2DQ9H6A0 471 aaPredicted RBP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 MANSC1Q9H8J5 431 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SSU72Q9NP77 194 aaKnown RBP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 COCHO43405 550 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SOD2P04179 222 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 C8AP07357 584 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TPBGLP0DKB5 382 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF24P17028 368 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 PTPN3P26045 913 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 INHBCP55103 352 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SESN3P58005 492 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 POLD3Q15054 466 aaPredicted RBP13.26□□□□□ -0.29
COL18A1-201ENST00000342220 CTC1Q2NKJ3 1217 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TTC17Q96AE7 1141 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 PKMYT1Q99640 499 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TM6SF2Q9BZW4 377 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 ACSS2Q9NR19 701 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 SYBUQ9NX95 663 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 USP3Q9Y6I4 520 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 DOCK6Q96HP0 2047 aa13.26□□□□□ -0.29
COL18A1-201ENST00000342220 TCRBV9S1A1TA0A576 114 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 H0Y626 953 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 RAMP2O60895 175 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 TOP3BO95985 862 aaKnown RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms