RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 H6PDO95479 791 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 MCF2P10911 925 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 NMBRP28336 390 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 NME3Q13232 169 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 SLC26A9Q7LBE3 791 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 TMEM135Q86UB9 458 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 SLC41A1Q8IVJ1 513 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 CPNE9Q8IYJ1 553 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 PRMT7Q9NVM4 692 aaPredicted RBP22.69■■□□□ 1.22
TRIM28-202ENST00000341753 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.69■■□□□ 1.222e-6■■□□□ 11.5
TRIM28-202ENST00000341753 KCNH4Q9UQ05 1017 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 PCDHGA7Q9Y5G6 932 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.69■■□□□ 1.22
TRIM28-202ENST00000341753 DCAF6Q58WW2 860 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 POTEHQ6S545 545 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 SETD3Q86TU7 594 aaPredicted RBP22.68■■□□□ 1.22
TRIM28-202ENST00000341753 RBM12BQ8IXT5 1001 aaKnown RBP22.68■■□□□ 1.22
TRIM28-202ENST00000341753 FSTL5Q8N475 847 aaPredicted RBP22.68■■□□□ 1.22
TRIM28-202ENST00000341753 DCUN1D5Q9BTE7 237 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 ARHGEF38Q9NXL2 777 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF638Q14966 1978 aaKnown RBP22.68■■□□□ 1.22
TRIM28-202ENST00000341753 TMX2-CTNND1H3BSU7 103 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 GLUD2P49448 558 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 ENTPD1P49961 510 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 ITPRIPL1Q6GPH6 555 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 RPS27LQ71UM5 84 aaKnown RBP22.68■■□□□ 1.22
TRIM28-202ENST00000341753 C1QTNF1Q9BXJ1 281 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 OLAHQ9NV23 265 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 XPR1Q9UBH6 696 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 SCN1AP35498 2009 aa22.68■■□□□ 1.22
TRIM28-202ENST00000341753 ZBTB24O43167 697 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 DLX3O60479 287 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 H2AFYO75367 372 aaKnown RBP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 TADA2AO75478 443 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 HNRNPLP14866 589 aaKnown RBP eCLIP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 CDK9P50750 372 aaKnown RBP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 PPIL2Q13356 520 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 TAPT1Q6NXT6 567 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 ERI1Q8IV48 349 aaKnown RBP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 HERC6Q8IVU3 1022 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 LPGAT1Q92604 370 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 SLCO4A1Q96BD0 722 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 PPWD1Q96BP3 646 aaKnown RBP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF597Q96LX8 424 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 GTSE1Q9NYZ3 720 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 EBF1Q9UH73 591 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 CAPNS1P04632 268 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 PTPN3P26045 913 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 PITRM1Q5JRX3 1037 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 MAMDC4Q6UXC1 1216 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 CARM1Q86X55 608 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 PSTKQ8IV42 348 aaKnown RBP22.67■■□□□ 1.22
TRIM28-202ENST00000341753 MIPOL1Q8TD10 442 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 TRPC7Q9HCX4 862 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 MYRFQ9Y2G1 1151 aa22.67■■□□□ 1.22
TRIM28-202ENST00000341753 FAM72CH0Y354 149 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 H3BNH8 94 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TIMM44O43615 452 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 CREB5Q02930 508 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TNFAIP2Q03169 654 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 FAM72AQ5TYM5 149 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 FAM72DQ6L9T8 149 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 FAM72BQ86X60 149 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 ASB9Q96DX5 294 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 RMND5BQ96G75 393 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TSNARE1Q96NA8 513 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 IGSF9Q9P2J2 1179 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TUBGCP4Q9UGJ1 667 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 PADI4Q9UM07 663 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 NEMP2A6NFY4 417 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TIPRLO75663 272 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 MT-CO1P00395 513 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TFPTP0C1Z6 253 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 LMO2P25791 158 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TRIM25Q14258 630 aaKnown RBP22.66■■□□□ 1.22
TRIM28-202ENST00000341753 FAM47BQ8NA70 645 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 SLC39A3Q9BRY0 314 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 RRN3Q9NYV6 651 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 CCDC167Q9P0B6 97 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 SH3BP1Q9Y3L3 701 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF711Q9Y462 761 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 PRORSD1PA6NEY8 169 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 AP2A1O95782 977 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 ALDH3B2P48448 385 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TXNL4AP83876 142 aaKnown RBP22.66■■□□□ 1.22
TRIM28-202ENST00000341753 C16orf72Q14CZ0 275 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 ADRM1Q16186 407 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 ANO4Q32M45 955 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 C9orf131Q5VYM1 1079 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 HMBOX1Q6NT76 420 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 CENPLQ8N0S6 344 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-202ENST00000341753 CNTD1Q8N815 330 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 SLC7A14Q8TBB6 771 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 IRGQQ8WZA9 623 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 C18orf25Q96B23 403 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-202ENST00000341753 MLPHQ9BV36 600 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-202ENST00000341753 IL22Q9GZX6 179 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TMEM165Q9HC07 324 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 GTF2IRD1Q9UHL9 959 aa22.66■■□□□ 1.22
TRIM28-202ENST00000341753 TLL2Q9Y6L7 1015 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms