RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PRUNE1Q86TP1 453 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 OSTM1Q86WC4 334 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 WDR41Q9HAD4 459 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 SOHLH2Q9NX45 425 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ZFP69BQ9UJL9 534 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 CCNDBP1O95273 360 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 RHOP08100 348 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 CTPS1P17812 591 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 PIK3CGP48736 1102 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 GALNT3Q14435 633 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 LRRC8EQ6NSJ5 796 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 ALLCQ8N6M5 410 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 SPATA17Q96L03 361 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 CSPG4P5Q96PW8 444 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 Q9H521 79 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ARIH1Q9Y4X5 557 aaPredicted RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 DOCK1Q14185 1865 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 C9IYK1 514 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ANGPT2O15123 496 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 VSNL1P62760 191 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 IL10RBQ08334 325 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FAM26DQ5JW98 314 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FBXO38Q6PIJ6 1188 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 VITQ6UXI7 678 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FAM47EQ6ZV65 393 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 AGR3Q8TD06 166 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 VPS45Q9NRW7 570 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 SLC24A2Q9UI40 661 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 LEFTY2O00292 366 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 VAPBO95292 243 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 TIE1P35590 1138 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 GP5P40197 560 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 PHYKPLQ8IUZ5 450 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 COLGALT2Q8IYK4 626 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 C4orf33Q8N1A6 199 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 BEND7Q8N7W2 519 aaPredicted RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 C8orf33Q9H7E9 229 aaPredicted RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 IL36AQ9UHA7 158 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 GGA2Q9UJY4 613 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 EDDM13A0A1B0GTR0 161 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 GPR15P49685 360 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 CCNG1P51959 295 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 DGKEP52429 567 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ARHGDIAP52565 204 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 DAB2P98082 770 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ADGRF1Q5T601 910 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FAM45BPQ6NSW5 357 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ZNF662Q6ZS27 426 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 SRLQ86TD4 932 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FAM45AQ8TCE6 357 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 LRRC37BQ96QE4 947 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ABCG4Q9H172 646 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 VIPAS39Q9H9C1 493 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 MTRRQ9UBK8 725 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 SLC27A6Q9Y2P4 619 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 CATP04040 527 aaKnown RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 PCCBP05166 539 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 CSHL1Q14406 222 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 PUS10Q3MIT2 529 aaKnown RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 PRR23BQ6ZRT6 265 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 CEP295NLQ96MC4 621 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 EVLQ9UI08 416 aaPredicted RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 FPGTO14772 594 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 STBD1O95210 358 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 BAG2O95816 211 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ADRA1DP25100 572 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FAAP100Q0VG06 881 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 NYAP1Q6ZVC0 841 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 DET1Q7L5Y6 550 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 TAS1R3Q7RTX0 852 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 LMNTD2Q8IXW0 634 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 ATL1Q8WXF7 558 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 OTUB1Q96FW1 271 aaPredicted RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 EXOC2Q96KP1 924 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 CASD1Q96PB1 797 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 KXD1Q9BQD3 176 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 FAM126AQ9BYI3 521 aaPredicted RBP10.28□□□□□ -0.76
USP54-201ENST00000339859 GLOD4Q9HC38 313 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 SPASTQ9UBP0 616 aa10.28□□□□□ -0.76
USP54-201ENST00000339859 PAPSS1O43252 624 aaPredicted RBP10.27□□□□□ -0.76
USP54-201ENST00000339859 FSBPO95073 299 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 BMP10O95393 424 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 UGT2B4P06133 528 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 FLT3P36888 993 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 CSKP41240 450 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 CCR3P51677 355 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 GRM2Q14416 872 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 HIC1Q14526 733 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 CARD16Q5EG05 197 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 PRR23CQ6ZRP0 262 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 HDDC3Q8N4P3 179 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 GDPD5Q8WTR4 605 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 HMCESQ96FZ2 354 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 PAFAH2Q99487 392 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 ECT2Q9H8V3 914 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 MLXIPLQ9NP71 852 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 PDLIM7Q9NR12 457 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 NDOR1Q9UHB4 597 aa10.27□□□□□ -0.76
USP54-201ENST00000339859 ITM2BQ9Y287 266 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms