RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 C11orf24Q96F05 449 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SPAG5Q96R06 1193 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LGMNQ99538 433 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HSD17B14Q9BPX1 270 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 FEM1AQ9BSK4 669 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LRRC1Q9BTT6 524 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SLC46A2Q9BY10 475 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PIDD1Q9HB75 910 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ECHDC1Q9NTX5 307 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TMEM74BQ9NUR3 256 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PTBP2Q9UKA9 531 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 RPL26L1Q9UNX3 145 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KIR2DS5A0A0G2JLQ3 304 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 A0A0G2JNG1 304 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF840PA6NDX5 716 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 VSTM2BA6NLU5 285 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 F8W031 263 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 H0Y8X5 98 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KIR2DS3K7RE56 304 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LDHAP00338 332 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SPATA31D3P0C874 917 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GOLGA8HP0CJ92 632 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SETSIPP0DME0 302 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ICAM2P13598 275 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HOXB2P14652 356 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ATF6P18850 670 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HNRNPA2B1P22626 353 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GATA3P23771 443 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SLC5A2P31639 672 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GALNSP34059 522 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 NTF4P34130 210 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TRIM23P36406 574 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MAPK8P45983 427 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 THOP1P52888 689 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MFAP3P55082 362 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 OLIG2Q13516 323 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 DCTN1Q14203 1278 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KIR2DS5Q14953 304 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ELOCQ15369 112 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TSC22D1Q15714 1073 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PFKFB3Q16875 520 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KIF19Q2TAC6 998 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MIIPQ5JXC2 388 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LCE4AQ5TA78 99 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PLEKHA7Q6IQ23 1121 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PRSS55Q6UWB4 352 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MPZL3Q6UWV2 235 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SPATA31D4Q6ZUB0 917 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 USP45Q70EL2 814 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 OR10T2Q8NGX3 314 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 UHMK1Q8TAS1 419 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SLC7A14Q8TBB6 771 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GIPC2Q8TF65 315 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HNRNPLLQ8WVV9 542 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 C1orf74Q96LT6 269 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KXD1Q9BQD3 176 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 DCTPP1Q9H773 170 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZFP57Q9NU63 452 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 UTP6Q9NYH9 597 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ELOVL5Q9NYP7 299 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 COPG2Q9UBF2 871 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SNX11Q9Y5W9 270 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SNX8Q9Y5X2 465 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SPTA1P02549 2419 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LOC105371242A0A075B767 164 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TLCD2A6NGC4 264 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZSCAN5CA6NGD5 496 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LEFTY2O00292 366 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TULP1O00294 542 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SIAH2O43255 324 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SPRY1O43609 319 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LETM1O95202 739 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 BMP10O95393 424 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 JUNDP17535 347 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 XRCC1P18887 633 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PRPH2P23942 346 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GNA11P29992 359 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TIMP3P35625 211 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MAGEA8P43361 318 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 CARSP49589 748 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TOB1P50616 345 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GALCP54803 685 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 DYNLL1P63167 89 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 RBM10P98175 930 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LAMTOR4Q0VGL1 99 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 CBLBQ13191 982 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ELAVL3Q14576 367 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SSPNQ14714 243 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TEAD2Q15562 447 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZNHIT3Q15649 155 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 INPP5JQ15735 1006 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 NRF1Q16656 503 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 UBAP2Q5T6F2 1119 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HGSNATQ68CP4 663 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GBP6Q6ZN66 633 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GCNT7Q6ZNI0 430 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MAATS1Q7Z4T9 603 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PHLDB2Q86SQ0 1253 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 IQCA1Q86XH1 822 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 CCDC146Q8IYE0 955 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms