RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF669Q96BR6 464 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ADI1Q9BV57 179 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 HERC2P3Q9BVR0 1158 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 EGFL7Q9UHF1 273 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 TLL2Q9Y6L7 1015 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 EIF3FO00303 357 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 HNRNPLP14866 589 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 NFATC3Q12968 1075 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 CBLBQ13191 982 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 C6orf10Q5SRN2 563 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 UTS2BQ765I0 119 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 EEPD1Q7L9B9 569 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 BPIFB6Q8NFQ5 453 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 OR52K1Q8NGK4 314 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 MFSD3Q96ES6 412 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 CPB2Q96IY4 423 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 APOL2Q9BQE5 337 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 PCDH12Q9NPG4 1184 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 IPO11Q9UI26 975 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 DGKBQ9Y6T7 804 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 RNF103-CHMP3A0A140T963 221 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 DYTNA2CJ06 578 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 C9JVG2 144 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 TADA2AO75478 443 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 MT-ND1P03886 318 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 PGAM1P18669 254 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 ATP6V1B2P21281 511 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 MAP4P27816 1152 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 SLC7A1P30825 629 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 SPIDRQ14159 915 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 AGKQ53H12 422 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 PPP4R4Q6NUP7 873 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 SAMD7Q7Z3H4 446 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 CDKL3Q8IVW4 592 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 TMEM151AQ8N4L1 468 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 SGCDQ92629 289 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 HPS1Q92902 700 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 RBBP8Q99708 897 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF341Q9BYN7 854 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 DRC3Q9H069 523 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 GPRC5DQ9NZD1 345 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 DTLQ9NZJ0 730 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 ERGIC3Q9Y282 383 aa13.63□□□□□ -0.23
CCDC88C-201ENST00000331194 KPNA7A9QM74 516 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TMEM114B3SHH9 223 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 MED7O43513 233 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 IL18RAPO95256 599 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 PSAPP07602 524 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 HOXC6P09630 235 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 KCNA2P16389 499 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 DCKP27707 260 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 NME5P56597 212 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 GALNT2Q10471 571 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 CAPSQ13938 189 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 MOGQ16653 247 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TRIM16LQ309B1 348 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 PIWIL3Q7Z3Z3 882 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 PORCNQ9H237 461 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 SIAEQ9HAT2 523 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TMPRSS4Q9NRS4 437 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 CACNA2D2Q9NY47 1150 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 UTP6Q9NYH9 597 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 CROTQ9UKG9 612 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 HEATR9A2RTY3 570 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 DYNC1LI2O43237 492 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 NR3C2P08235 984 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 IREB2P48200 963 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 MERTKQ12866 999 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 CARTPTQ16568 116 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 MCF2L2Q86YR7 1114 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 NLGN2Q8NFZ4 835 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TRPC4APQ8TEL6 797 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 KCTD4Q8WVF5 259 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 HTR3CQ8WXA8 447 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 SNX27Q96L92 541 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TNFRSF12AQ9NP84 129 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 GID8Q9NWU2 228 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 DAPK2Q9UIK4 370 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 QSER1Q2KHR3 1735 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TCRBV3S1A0A5B6 114 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 NEMP2A6NFY4 417 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 FAM155AB1AL88 458 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 TRIM24O15164 1050 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 GARSP41250 739 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 SLC7A2P52569 658 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 SP2Q02086 613 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 REP15Q6BDI9 236 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 SPPL2CQ8IUH8 684 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 CADM3Q8N126 398 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 GABPB2Q8TAK5 448 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 CSF3RQ99062 836 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 JPH1Q9HDC5 661 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 SUCOQ9UBS9 1254 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 POU2F3Q9UKI9 436 aa13.62□□□□□ -0.23
CCDC88C-201ENST00000331194 KIAA1217Q5T5P2 1943 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 H0YJX3 145 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 AQP9O43315 295 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 TPH1P17752 444 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 IDUAP35475 653 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 PTPN9P43378 593 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms