RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 INTS11Q5TA45 600 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 PLET1Q6UQ28 207 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CCDC28AQ8IWP9 274 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SLFN12Q8IYM2 578 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 THEMISQ8N1K5 641 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF433Q8N7K0 673 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 POGLUT1Q8NBL1 392 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NSUN6Q8TEA1 469 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 GDPD5Q8WTR4 605 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FAM167AQ96KS9 214 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SERTAD4Q9NUC0 356 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ERVK-18Q9QC07 812 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FBXL3Q9UKT7 428 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 KCTD3Q9Y597 815 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 IBTKQ9P2D0 1353 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SEC14L6B5MCN3 397 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CACNB4O00305 520 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 EML1O00423 815 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 GRAP2O75791 330 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 EYA4O95677 639 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CTNNB1P35222 781 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 MTAPQ13126 283 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 C4orf17Q53FE4 359 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ADNP2Q6IQ32 1131 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CYP2U1Q7Z449 544 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 MTDHQ86UE4 582 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TRIM48Q8IWZ4 208 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 IQCF1Q8N6M8 205 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 MFSD9Q8NBP5 474 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 RIN2Q8WYP3 895 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 C12orf43Q96C57 262 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ZHX1-C8orf76Q96EF9 292 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 PLEKHA3Q9HB20 300 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TMEM51Q9NW97 253 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 MAGEB16A2A368 324 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 C2orf78A6NCI8 922 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NUDT19A8MXV4 375 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CLOCKO15516 846 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NDUFA10O95299 355 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ALOX5P09917 674 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 PVALBP20472 110 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 STAT3P40763 770 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ALDH9A1P49189 494 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC11A1P49279 550 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 USP46P62068 366 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 GPR158Q5T848 1215 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CARD17Q5XLA6 110 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 OTUD7BQ6GQQ9 843 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 KDM7AQ6ZMT4 941 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 DPY19L4Q7Z388 723 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 IQCHQ86VS3 1027 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC22A16Q86VW1 577 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 PM20D2Q8IYS1 436 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CA5BP1Q8WTZ4 195 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SMPDL3BQ92485 455 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FAM122AQ96E09 287 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 C8orf37Q96NL8 207 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CAMKK2Q96RR4 588 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 MLXIPQ9HAP2 919 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TCF7L1Q9HCS4 588 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 POLD4Q9HCU8 107 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ACOXLQ9NUZ1 547 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CALML5Q9NZT1 146 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SERTAD1Q9UHV2 236 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FKBP7Q9Y680 259 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ANKRD33BA6NCL7 494 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 FCHO1O14526 889 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 PROM1O43490 865 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 RGS14O43566 566 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ACSL4O60488 711 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 LILRB5O75023 590 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 SPAG6O75602 509 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 RAD17O75943 681 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 FBXO21O94952 628 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 PENKP01210 267 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 JUPP14923 745 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ATP4AP20648 1035 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 HTR2AP28223 471 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 RPL4P36578 427 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 OR3A3P47888 321 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 USP11P51784 963 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 POU4F2Q12837 409 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 USP4Q13107 963 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ORC1Q13415 861 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 FASTKD3Q14CZ7 662 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 TTC38Q5R3I4 469 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC30A10Q6XR72 485 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 CREB3L2Q70SY1 520 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 SSX7Q7RTT5 188 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 FBXO11Q86XK2 927 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 EID3Q8N140 333 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 METTL4Q8N3J2 472 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF283Q8N7M2 679 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 C3orf49Q96BT1 292 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 CEP41Q9BYV8 373 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 AATKQ6ZMQ8 1374 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 SHOXO15266 292 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 PHF2O75151 1096 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 TJP3O95049 919 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ASNSP08243 561 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms