RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 DENND1BQ6P3S1 775 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 RPTNQ6XPR3 784 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ANKRD52Q8NB46 1076 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 FNDC8Q8TC99 324 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 C7orf43Q8WVR3 580 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF317Q96PQ6 595 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 HAPLN3Q96S86 360 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 NLNQ9BYT8 704 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 DSN1Q9H410 356 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 COPS7BQ9H9Q2 264 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CAB39LQ9H9S4 337 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF112Q9UJU3 913 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TLR2O60603 784 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CRTAMO95727 393 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 DHFRP00374 187 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 RALAP11233 206 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PLOD1Q02809 727 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 POU5F1BQ06416 359 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CHI3L2Q15782 390 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PLEKHA7Q6IQ23 1121 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 APOBEC3FQ8IUX4 373 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SP8Q8IXZ3 490 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 UXS1Q8NBZ7 420 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TGFBRAP1Q8WUH2 860 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 MMP27Q9H306 513 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PAK6Q9NQU5 681 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 AGPAT5Q9NUQ2 364 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 AURKCQ9UQB9 309 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 EGFRP00533 1210 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 AMPD1P23109 780 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 F8A1P23610 371 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 NEK3P51956 506 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CDH4P55283 916 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PKNOX1P55347 436 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 EEFSECP57772 596 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TFAMQ00059 246 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PLCL1Q15111 1095 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF181Q2M3W8 571 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SH3RF3Q8TEJ3 882 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TEFMQ96QE5 360 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM79Q9BSE2 394 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 MYL10Q9BUA6 226 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 C12orf65Q9H3J6 166 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LGR6Q9HBX8 967 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ADPRHL2Q9NX46 363 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CLTBP09497 229 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 FGFR2P21802 821 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PTBP1P26599 531 aaKnown RBP eCLIP5.3□□□□□ -1.563e-7■■■■□ 20.5
SCN1A-201ENST00000303395 PSEN1P49768 467 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 NUDT2P50583 147 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 HIST2H2AA3Q6FI13 130 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 OR56A4Q8NGH8 313 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CLHC1Q8NHS4 586 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SLC44A1Q8WWI5 657 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 GPKOWQ92917 476 aaPredicted RBP eCLIP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SMAD5Q99717 465 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 GREM2Q9H772 168 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 RMI1Q9H9A7 625 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SPATA31A3Q5VYP0 1347 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 UBA6A0AVT1 1052 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 E9PBE3 544 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 MDM4O15151 490 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 OGTO15294 1046 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 RNASEH1O60930 286 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 IFNA7P01567 189 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PGK2P07205 417 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LBPP18428 481 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 KLRC3Q07444 240 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LGALS3BPQ08380 585 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PRKG2Q13237 762 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CCDC58Q4VC31 144 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 GTF2IRD2BQ6EKJ0 949 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 GTF2IRD2Q86UP8 949 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LHFPL3Q86UP9 236 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 DCAKDQ8WVC6 231 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 MTMR8Q96EF0 704 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SLC6A15Q9H2J7 730 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SP140LQ9H930 580 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 DNAJC11Q9NVH1 559 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TBC1D30Q9Y2I9 924 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 COQ4Q9Y3A0 265 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PCDHGB1Q9Y5G3 927 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 BCLAF3A2AJT9 711 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 KRT34O76011 436 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 OR7A10O76100 309 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ALOX15P16050 662 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PPP2R1BP30154 601 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 YAP1P46937 504 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PSMD4P55036 377 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ELAVL2Q12926 359 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TRAM1Q15629 374 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LONRF1Q17RB8 773 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF484Q5JVG2 852 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SYTL5Q8TDW5 730 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZUFSPQ96AP4 578 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CEP295NLQ96MC4 621 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 C12orf66Q96MD2 445 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CPXM1Q96SM3 734 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CCDC32Q9BV29 185 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms