RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 COQ4Q9Y3A0 265 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 EVPLLA8MZ36 301 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 HS6ST1O60243 411 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 DLG1Q12959 904 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ZC3H12AQ5D1E8 599 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 LDLRAP1Q5SW96 308 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 GLB1LQ6UWU2 654 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ANKS1BQ7Z6G8 1248 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 SPATA6LQ8N4H0 392 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 PCYT2Q99447 389 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 FICDQ9BVA6 458 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 POMKQ9H5K3 350 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ABCB10Q9NRK6 738 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 TMEM161AQ9NX61 479 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 KPNA6O60684 536 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 THP07101 528 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 CD151P48509 253 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 MBTD1Q05BQ5 628 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ZDHHC13Q8IUH4 622 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 DSELQ8IZU8 1212 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 SFRP1Q8N474 314 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ADAM32Q8TC27 787 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 NKD2Q969F2 451 aaPredicted RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 BTBD9Q96Q07 612 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 COQ7Q99807 217 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 APOBEC3GQ9HC16 384 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 NOCTQ9UK39 431 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 PKP3Q9Y446 797 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 TIMM13Q9Y5L4 95 aaPredicted RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 TYW5A2RUC4 315 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 CLASP2O75122 1294 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 C22orf31O95567 290 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ZNF682O95780 498 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 MMP8P22894 467 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 FRG1Q14331 258 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 FAM98BQ52LJ0 330 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 ABRAXAS1Q6UWZ7 409 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ATG16L2Q8NAA4 619 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 DNAJB14Q8TBM8 379 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 SLC13A4Q9UKG4 626 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 FAM32AQ9Y421 112 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 CNTNAP2Q9UHC6 1331 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 CASTOR2A6NHX0 329 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 MSCO60682 206 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 ATG7O95352 703 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 HNRNPLP14866 589 aaKnown RBP eCLIP15.55■□□□□ 0.08
SHH-201ENST00000297261 ACAT1P24752 427 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 PCSK1P29120 753 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 SLC7A2P52569 658 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 RALGDSQ12967 914 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 PLCL1Q15111 1095 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 NADK2Q4G0N4 442 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 NT5DC4Q86YG4 428 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 HASPINQ8TF76 798 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 FBXL18Q96ME1 805 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 STN1Q9H668 368 aaKnown RBP15.55■□□□□ 0.08
SHH-201ENST00000297261 ZNF556Q9HAH1 456 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 MID1IP1Q9NPA3 183 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 LIMD1Q9UGP4 676 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 RNF112Q9ULX5 631 aa15.55■□□□□ 0.08
SHH-201ENST00000297261 MYH7BA7E2Y1 1941 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 B4GALT4O60513 344 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 ALDH1A1P00352 501 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 HMBSP08397 361 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 XPAP23025 273 aaPredicted RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 SLC5A3P53794 718 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 CARTPTQ16568 116 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 PPM1JQ5JR12 505 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 ARMC4Q5T2S8 1044 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 OR7A2PQ8NGA2 310 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 ACMSDQ8TDX5 336 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 ZFAND2BQ8WV99 257 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 ITFG2Q969R8 447 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 APOL5Q9BWW9 433 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 CAB39LQ9H9S4 337 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 SPAG4Q9NPE6 437 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 PRG3Q9Y2Y8 225 aaPredicted RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 ANKRD31Q8N7Z5 1873 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 LSM1O15116 133 aaKnown RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 TSPAN3O60637 253 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 SOAT2O75908 522 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 AXLP30530 894 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 GHRHRQ02643 423 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 SPANXN3Q5MJ09 141 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 PACS1Q6VY07 963 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 HPS1Q92902 700 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 MTERF3Q96E29 417 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 OMA1Q96E52 524 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 SNX15Q9NRS6 342 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 SNRPB2P08579 225 aaKnown RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 NR4A1P22736 598 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 BCAT1P54687 386 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 HADHBP55084 474 aaKnown RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 INAQ16352 499 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 DGUOKQ16854 277 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 PCSK9Q8NBP7 692 aaKnown RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 BPIFB6Q8NFQ5 453 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 PPP1R10Q96QC0 940 aaKnown RBP15.54■□□□□ 0.08
SHH-201ENST00000297261 RTKNQ9BST9 563 aa15.54■□□□□ 0.08
SHH-201ENST00000297261 EPS8L2Q9H6S3 715 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 289.3 ms