RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 ARMCX1Q9P291 453 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 SNX6Q9UNH7 406 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 COL3A1P02461 1466 aaPredicted RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 CCL16O15467 120 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DCXO43602 365 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 TLR5O60602 858 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 PAICSP22234 425 aaKnown RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 PSMB9P28065 219 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 CDK7P50613 346 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 SIX5Q8N196 739 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 STAG3L4Q8TBR4 150 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 BDH2Q9BUT1 245 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 RIBC2Q9H4K1 309 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 L1RE1Q9UN81 338 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 CNTNAP1P78357 1384 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 A0A1B0GW55 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 KCNH1O95259 989 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4L2P0CJ85 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4L3P0CJ86 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4L4P0CJ87 422 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4L5P0CJ88 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4L6P0CJ89 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4L7P0CJ90 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 GRM5P41594 1212 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 SNX32Q86XE0 403 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 OR8H2Q8N162 312 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 ZSCAN18Q8TBC5 510 aaPredicted RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DUX4Q9UBX2 424 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 YDJCA8MPS7 323 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 EPORP19235 508 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 HNF4AP41235 474 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 NEK3P51956 506 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 C21orf59P57076 290 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 IZUMO2Q6UXV1 221 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 CFAP52Q8N1V2 620 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 RAD21L1Q9H4I0 556 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 FARP2O94887 1054 aaPredicted RBP17.47■□□□□ 0.39
SHANK1-201ENST00000293441 HNRNPH1P31943 449 aaKnown RBP17.47■□□□□ 0.39
SHANK1-201ENST00000293441 DUSP4Q13115 394 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 UNC5AQ6ZN44 842 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 NKX2-3Q8TAU0 364 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 CD99L2Q8TCZ2 262 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 RNF157Q96PX1 679 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 HLA-DQA2P01906 255 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 MAPK8P45983 427 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 NUP107P57740 925 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 IL17AQ16552 155 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 RNF44Q7L0R7 432 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 NETO2Q8NC67 525 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 ACTRT2Q8TDY3 377 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 RERGQ96A58 199 aaPredicted RBP17.47■□□□□ 0.39
SHANK1-201ENST00000293441 KLHL1Q9NR64 748 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 GSAPA4D1B5 854 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 FFAR3O14843 346 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 GPR42O15529 346 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 OR10H2O60403 315 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 ACSL4O60488 711 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 GNRH1P01148 92 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 FLT3P36888 993 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 TTPAP49638 278 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 TAF13Q15543 124 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 C9orf57Q5W0N0 161 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 EEF1DP3Q658K8 133 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 OR10G6Q8NH81 332 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 HTR1BP28222 390 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 CORO7P57737 925 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 RNFT2Q96EX2 444 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 UGT2B28Q9BY64 529 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 DCLRE1BQ9H816 532 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 SGTAO43765 313 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 FKBP6O75344 327 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 FTH1P02794 183 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 KYAT3Q6YP21 454 aaKnown RBP17.47■□□□□ 0.39
SHANK1-201ENST00000293441 NKAPQ8N5F7 415 aaKnown RBP17.47■□□□□ 0.39
SHANK1-201ENST00000293441 TMEM237Q96Q45 408 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 SLC9A8Q9Y2E8 581 aa17.47■□□□□ 0.39
SHANK1-201ENST00000293441 ITGB5P18084 799 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 MRPS5P82675 430 aaKnown RBP17.46■□□□□ 0.39
SHANK1-201ENST00000293441 ZNF844Q08AG5 666 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 ITFG1Q8TB96 612 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 LNX1Q8TBB1 728 aaPredicted RBP17.46■□□□□ 0.39
SHANK1-201ENST00000293441 SLC4A5Q9BY07 1137 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 TLE6Q9H808 572 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 ADAM30Q9UKF2 790 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 LIASO43766 372 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 ADH1CP00326 375 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 FAM71AQ8IYT1 594 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 TTPALQ9BTX7 342 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 VPS45Q9NRW7 570 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 SLC12A4Q9UP95 1085 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 PDE5AO76074 875 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 ARF4P18085 180 aaPredicted RBP17.46■□□□□ 0.39
SHANK1-201ENST00000293441 GPR158Q5T848 1215 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 FAM46CQ5VWP2 391 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 AGMOQ6ZNB7 445 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 FAM35AQ86V20 835 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 FAM20CQ8IXL6 584 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 OR6K2Q8NGY2 324 aa17.46■□□□□ 0.39
SHANK1-201ENST00000293441 KIF1AQ12756 1690 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms