RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PRG3Q9Y2Y8 225 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 A0A088AWK7 358 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 NEMP1O14524 444 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 FGF10O15520 208 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 PSMD3O43242 534 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 ZBTB14O43829 449 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 COPAP53621 1224 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 CAP1Q01518 475 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 NET1Q7Z628 596 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 RTN4RL1Q86UN2 441 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 OR52B2Q96RD2 323 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 TRIM62Q9BVG3 475 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 TRPV6Q9H1D0 765 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 WDR55Q9H6Y2 383 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 STX18Q9P2W9 335 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 G3BP2Q9UN86 482 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 CDY1Q9Y6F8 540 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 NYNRINQ9P2P1 1898 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 MYLKQ15746 1914 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 TTC24A2A3L6 582 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 GRIA4P48058 902 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 EPHB1P54762 984 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 FCGRTP55899 365 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 MAXP61244 160 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 PIK3R6Q5UE93 754 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 ZNF598Q86UK7 904 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 PPHLN1Q8NEY8 458 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 SCG3Q8WXD2 468 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 ZNF333Q96JL9 665 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 OMDQ99983 421 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 C1orf21Q9H246 121 aa18.61■□□□□ 0.57
SHKBP1-201ENST00000291842 AURKAO14965 403 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 PDE5AO76074 875 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 SLC10A3P09131 477 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 ATP6V1C1P21283 382 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 HOXC13P31276 330 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 OR1G1P47890 313 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 ARCN1P48444 511 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 NAGLUP54802 743 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 USP46P62068 366 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 ZNF33AQ06730 810 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 ZNF280DQ6N043 979 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 EPGNQ6UW88 154 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 CENPLQ8N0S6 344 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 FSTL5Q8N475 847 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 TTC9BQ8N6N2 239 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 MRGPRX2Q96LB1 330 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 IPO11Q9UI26 975 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 COL4A4P53420 1690 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 KCNU1A8MYU2 1149 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 AP3B1O00203 1094 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 SOAT2O75908 522 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 TBX18O95935 607 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 ADRA1AP35348 466 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 SLC1A2P43004 574 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 GEMP55040 296 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 ITKQ08881 620 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 TSNAXIP1Q2TAA8 658 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 FRMD7Q6ZUT3 714 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 BEND5Q7L4P6 421 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 LZTR1Q8N653 840 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 RTL3Q8N8U3 475 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 SREK1Q8WXA9 508 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 NXNL1Q96CM4 212 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 SGF29Q96ES7 293 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 UROC1Q96N76 676 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 TSNARE1Q96NA8 513 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 KLHL5Q96PQ7 755 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 OSBPL1AQ9BXW6 950 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 NOL6Q9H6R4 1146 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 DNAJB4Q9UDY4 337 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 TCAF1Q9Y4C2 921 aa18.6■□□□□ 0.57
SHKBP1-201ENST00000291842 FAM95CA0A1B0GW59 222 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 J3KR12 359 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 CSRP3P50461 194 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ACTR3P61158 418 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 SLC12A1Q13621 1099 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ARL13AQ5H913 290 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 C6orf163Q5TEZ5 329 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ZNF470Q6ECI4 717 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 KLHDC8BQ8IXV7 354 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 B3GALT6Q96L58 329 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 TTC1Q99614 292 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 FAM96AQ9H5X1 160 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 PCDHB8Q9UN66 801 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 TMEM114B3SHH9 223 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 CNTN5O94779 1100 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 UPP2O95045 317 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 PIGNO95427 931 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 BAG2O95816 211 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 PRKAR2AP13861 404 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 TYMPP19971 482 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 MLLT6P55198 1093 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 DLG1Q12959 904 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 CUL3Q13618 768 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 TRMT5Q32P41 509 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 CLLU1OSQ5K130 101 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ZYG11AQ6WRX3 759 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ZNF354CQ86Y25 554 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms