RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 DUSP6Q16828 381 aa21.3■■□□□ 1
YBX3-202ENST00000279550 LGSNQ5TDP6 509 aa21.3■■□□□ 1
YBX3-202ENST00000279550 SPATA21Q7Z572 469 aa21.3■■□□□ 1
YBX3-202ENST00000279550 YTHDF3Q7Z739 585 aaKnown RBP21.3■■□□□ 1
YBX3-202ENST00000279550 ZNF75CPQ92670 426 aaPredicted RBP21.3■■□□□ 1
YBX3-202ENST00000279550 MRPL38Q96DV4 380 aaKnown RBP21.3■■□□□ 1
YBX3-202ENST00000279550 FAM111AQ96PZ2 611 aa21.3■■□□□ 1
YBX3-202ENST00000279550 HCFC1R1Q9NWW0 138 aa21.3■■□□□ 1
YBX3-202ENST00000279550 ZDHHC7Q9NXF8 308 aa21.3■■□□□ 1
YBX3-202ENST00000279550 USP15Q9Y4E8 981 aaPredicted RBP21.3■■□□□ 1
YBX3-202ENST00000279550 ATG2AQ2TAZ0 1938 aa21.3■■□□□ 1
YBX3-202ENST00000279550 ZCWPW2A0A1B0GU75 182 aa21.29■■□□□ 1
YBX3-202ENST00000279550 J3KR12 359 aa21.29■■□□□ 1
YBX3-202ENST00000279550 PSMD3O43242 534 aa21.29■■□□□ 1
YBX3-202ENST00000279550 CDC25CP30307 473 aa21.29■■□□□ 1
YBX3-202ENST00000279550 NDST2P52849 883 aa21.29■■□□□ 1
YBX3-202ENST00000279550 ANKRD20A4Q4UJ75 823 aa21.29■■□□□ 1
YBX3-202ENST00000279550 TIGD7Q6NT04 549 aaPredicted RBP21.29■■□□□ 1
YBX3-202ENST00000279550 ELMSAN1Q6PJG2 1045 aa21.29■■□□□ 1
YBX3-202ENST00000279550 TMEM135Q86UB9 458 aa21.29■■□□□ 1
YBX3-202ENST00000279550 CHSY1Q86X52 802 aa21.29■■□□□ 1
YBX3-202ENST00000279550 OTUD6BQ8N6M0 293 aa21.29■■□□□ 1
YBX3-202ENST00000279550 LRRC8CQ8TDW0 803 aa21.29■■□□□ 1
YBX3-202ENST00000279550 MTBPQ96DY7 904 aa21.29■■□□□ 1
YBX3-202ENST00000279550 CERS2Q96G23 380 aa21.29■■□□□ 1
YBX3-202ENST00000279550 SRPK1Q96SB4 655 aaKnown RBP21.29■■□□□ 1
YBX3-202ENST00000279550 TBL1YQ9BQ87 522 aa21.29■■□□□ 1
YBX3-202ENST00000279550 FICDQ9BVA6 458 aa21.29■■□□□ 1
YBX3-202ENST00000279550 COPEO14579 308 aa21.29■■□□□ 1
YBX3-202ENST00000279550 XYLBO75191 536 aa21.29■■□□□ 1
YBX3-202ENST00000279550 F7P08709 466 aaPredicted RBP21.29■■□□□ 1
YBX3-202ENST00000279550 EPHA5P54756 1037 aa21.29■■□□□ 1
YBX3-202ENST00000279550 NAB1Q13506 487 aa21.29■■□□□ 1
YBX3-202ENST00000279550 SEPT7Q16181 437 aaKnown RBP21.29■■□□□ 1
YBX3-202ENST00000279550 TXNDC8Q6A555 127 aa21.29■■□□□ 1
YBX3-202ENST00000279550 NAPEPLDQ6IQ20 393 aa21.29■■□□□ 1
YBX3-202ENST00000279550 DENND5AQ6IQ26 1287 aa21.29■■□□□ 1
YBX3-202ENST00000279550 LRRC49Q8IUZ0 686 aa21.29■■□□□ 1
YBX3-202ENST00000279550 IPMKQ8NFU5 416 aa21.29■■□□□ 1
YBX3-202ENST00000279550 MRPS31Q92665 395 aaKnown RBP21.29■■□□□ 1
YBX3-202ENST00000279550 TRPC7Q9HCX4 862 aa21.29■■□□□ 1
YBX3-202ENST00000279550 PRKAG3Q9UGI9 489 aa21.29■■□□□ 1
YBX3-202ENST00000279550 A0A1W2PRU2 124 aa21.28■■□□□ 1
YBX3-202ENST00000279550 CCT8L1PA6NM43 557 aa21.28■■□□□ 1
YBX3-202ENST00000279550 MYL4P12829 197 aa21.28■■□□□ 1
YBX3-202ENST00000279550 PTPN2P17706 415 aa21.28■■□□□ 1
YBX3-202ENST00000279550 TACR2P21452 398 aa21.28■■□□□ 1
YBX3-202ENST00000279550 CYP4F8P98187 520 aa21.28■■□□□ 1
YBX3-202ENST00000279550 CDH17Q12864 832 aa21.28■■□□□ 1
YBX3-202ENST00000279550 ZNF697Q5TEC3 545 aa21.28■■□□□ 1
YBX3-202ENST00000279550 TIFABQ6ZNK6 161 aa21.28■■□□□ 1
YBX3-202ENST00000279550 CCDC121Q6ZUS5 278 aa21.28■■□□□ 1
YBX3-202ENST00000279550 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.28■■□□□ 12e-6■■■■■ 44.8
YBX3-202ENST00000279550 CCT6BQ92526 530 aa21.28■■□□□ 1
YBX3-202ENST00000279550 CDKL2Q92772 493 aa21.28■■□□□ 1
YBX3-202ENST00000279550 MFSD3Q96ES6 412 aa21.28■■□□□ 1
YBX3-202ENST00000279550 RPRD1AQ96P16 312 aaPredicted RBP21.28■■□□□ 1
YBX3-202ENST00000279550 GCNAQ96QF7 691 aa21.28■■□□□ 1
YBX3-202ENST00000279550 PITPNM3Q9BZ71 974 aa21.28■■□□□ 1
YBX3-202ENST00000279550 ATXN3LQ9H3M9 355 aa21.28■■□□□ 1
YBX3-202ENST00000279550 CHRAC1Q9NRG0 131 aa21.28■■□□□ 1
YBX3-202ENST00000279550 PCMTD2Q9NV79 361 aa21.28■■□□□ 1
YBX3-202ENST00000279550 DNMT3BQ9UBC3 853 aaKnown RBP21.28■■□□□ 1
YBX3-202ENST00000279550 SOX13Q9UN79 622 aa21.28■■□□□ 1
YBX3-202ENST00000279550 ANAPC1Q9H1A4 1944 aa21.28■■□□□ 1
YBX3-202ENST00000279550 FAM237BA0A1B0GVD1 139 aa21.27■■□□□ 1
YBX3-202ENST00000279550 EDF1O60869 148 aaKnown RBP21.27■■□□□ 1
YBX3-202ENST00000279550 ANXA9O76027 345 aa21.27■■□□□ 1
YBX3-202ENST00000279550 USP1O94782 785 aa21.27■■□□□ 1
YBX3-202ENST00000279550 OLFM2O95897 454 aa21.27■■□□□ 1
YBX3-202ENST00000279550 ADRA1AP35348 466 aa21.27■■□□□ 1
YBX3-202ENST00000279550 FRG1Q14331 258 aaKnown RBP21.27■■□□□ 1
YBX3-202ENST00000279550 PTPRN2Q92932 1015 aa21.27■■□□□ 1
YBX3-202ENST00000279550 SLC22A12Q96S37 553 aa21.27■■□□□ 1
YBX3-202ENST00000279550 CYP2S1Q96SQ9 504 aa21.27■■□□□ 1
YBX3-202ENST00000279550 CDCA3Q99618 268 aaPredicted RBP21.27■■□□□ 1
YBX3-202ENST00000279550 PRKD2Q9BZL6 878 aa21.27■■□□□ 1
YBX3-202ENST00000279550 MKS1Q9NXB0 559 aa21.27■■□□□ 1
YBX3-202ENST00000279550 PHTF1Q9UMS5 762 aa21.27■■□□□ 1
YBX3-202ENST00000279550 AAR2Q9Y312 384 aaKnown RBP21.27■■□□□ 1
YBX3-202ENST00000279550 MYLKQ15746 1914 aa21.27■□□□□ 0.99
YBX3-202ENST00000279550 OBSL1O75147 1896 aa21.27■□□□□ 0.99
YBX3-202ENST00000279550 CCDC195A0A1B0GUA6 201 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 NRG2O14511 850 aaPredicted RBP21.26■□□□□ 0.99
YBX3-202ENST00000279550 FGF19O95750 216 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 TOP3BO95985 862 aaKnown RBP21.26■□□□□ 0.99
YBX3-202ENST00000279550 RHOP08100 348 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 POU2F2P09086 479 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 NMBRP28336 390 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 SLC6A4P31645 630 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 CCR2P41597 374 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 GEMP55040 296 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 MTA1Q13330 715 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 KCNC3Q14003 757 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 LINC00523Q86TU6 105 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 LGI2Q8N0V4 545 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 ARL14EPQ8N8R7 260 aaPredicted RBP21.26■□□□□ 0.99
YBX3-202ENST00000279550 ANKS4BQ8N8V4 417 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 PLD4Q96BZ4 506 aa21.26■□□□□ 0.99
YBX3-202ENST00000279550 THOC1Q96FV9 657 aaKnown RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms