RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 LRRC69Q6ZNQ3 347 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 PARS2Q7L3T8 475 aaKnown RBP13.01□□□□□ -0.33
CD44-203ENST00000278386 ZNF677Q86XU0 584 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 OR4C6Q8NH72 309 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 CRELD1Q96HD1 420 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 HEPHQ9BQS7 1158 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 VPS16Q9H269 839 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 GANQ9H2C0 597 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 KLHL11Q9NVR0 708 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 UCKL1Q9NWZ5 548 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 DNAJC28Q9NX36 388 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 PPARGC1AQ9UBK2 798 aaKnown RBP13.01□□□□□ -0.33
CD44-203ENST00000278386 ZNF212Q9UDV6 495 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 CLCA2Q9UQC9 943 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ACTL7AQ9Y615 435 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ANKRD36A6QL64 1941 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 SMG1Q96Q15 3661 aaKnown RBP13.01□□□□□ -0.33
CD44-203ENST00000278386 LRRK1Q38SD2 2015 aa13□□□□□ -0.33
CD44-203ENST00000278386 NEMP1O14524 444 aa13□□□□□ -0.33
CD44-203ENST00000278386 TLX3O43711 291 aaPredicted RBP13□□□□□ -0.33
CD44-203ENST00000278386 ZMPSTE24O75844 475 aa13□□□□□ -0.33
CD44-203ENST00000278386 GJB6O95452 261 aa13□□□□□ -0.33
CD44-203ENST00000278386 L1CAMP32004 1257 aa13□□□□□ -0.33
CD44-203ENST00000278386 ACVRL1P37023 503 aa13□□□□□ -0.33
CD44-203ENST00000278386 KLK7P49862 253 aa13□□□□□ -0.33
CD44-203ENST00000278386 POLR2FP61218 127 aaKnown RBP13□□□□□ -0.33
CD44-203ENST00000278386 RPS21P63220 83 aaKnown RBP13□□□□□ -0.33
CD44-203ENST00000278386 INSM1Q01101 510 aaPredicted RBP13□□□□□ -0.33
CD44-203ENST00000278386 SLC20A2Q08357 652 aa13□□□□□ -0.33
CD44-203ENST00000278386 ZNF211Q13398 564 aaPredicted RBP13□□□□□ -0.33
CD44-203ENST00000278386 TMEM259Q4ZIN3 620 aa13□□□□□ -0.33
CD44-203ENST00000278386 SOWAHCQ53LP3 525 aaPredicted RBP13□□□□□ -0.33
CD44-203ENST00000278386 RAB6CQ53S08 254 aa13□□□□□ -0.33
CD44-203ENST00000278386 ZNF542PQ5EBM4 170 aa13□□□□□ -0.33
CD44-203ENST00000278386 CARD16Q5EG05 197 aa13□□□□□ -0.33
CD44-203ENST00000278386 FKBP15Q5T1M5 1219 aa13□□□□□ -0.33
CD44-203ENST00000278386 KYAT3Q6YP21 454 aaKnown RBP13□□□□□ -0.33
CD44-203ENST00000278386 ARCQ7LC44 396 aa13□□□□□ -0.33
CD44-203ENST00000278386 BNIPLQ7Z465 357 aa13□□□□□ -0.33
CD44-203ENST00000278386 ZNF354CQ86Y25 554 aa13□□□□□ -0.33
CD44-203ENST00000278386 SLC22A18ASQ8N1D0 253 aa13□□□□□ -0.33
CD44-203ENST00000278386 SLC25A45Q8N413 288 aa13□□□□□ -0.33
CD44-203ENST00000278386 OR6K2Q8NGY2 324 aa13□□□□□ -0.33
CD44-203ENST00000278386 RXFP2Q8WXD0 754 aa13□□□□□ -0.33
CD44-203ENST00000278386 TBC1D31Q96DN5 1066 aa13□□□□□ -0.33
CD44-203ENST00000278386 NRSN2Q9GZP1 204 aa13□□□□□ -0.33
CD44-203ENST00000278386 RAB6CQ9H0N0 254 aa13□□□□□ -0.33
CD44-203ENST00000278386 NLRC4Q9NPP4 1024 aa13□□□□□ -0.33
CD44-203ENST00000278386 FAM207AQ9NSI2 230 aaPredicted RBP13□□□□□ -0.33
CD44-203ENST00000278386 OR12D3Q9UGF7 316 aa13□□□□□ -0.33
CD44-203ENST00000278386 DNAI1Q9UI46 699 aa13□□□□□ -0.33
CD44-203ENST00000278386 NOCTQ9UK39 431 aaKnown RBP13□□□□□ -0.33
CD44-203ENST00000278386 H3BM21 787 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 RRP8O43159 456 aaKnown RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 BRINP1O60477 761 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 ZNF821O75541 412 aaPredicted RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 GKP32189 559 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 SOX5P35711 763 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 MAPKAPK2P49137 400 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 GEMIN4P57678 1058 aaKnown RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 HNRNPKP61978 463 aaKnown RBP eCLIP12.99□□□□□ -0.33
CD44-203ENST00000278386 FMO1Q01740 532 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 CDR2Q01850 454 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 POLD3Q15054 466 aaPredicted RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 SYCP1Q15431 976 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 Q6ZSR6 202 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 ABI3BPQ7Z7G0 1075 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 JOSD2Q8TAC2 188 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 SLC30A5Q8TAD4 765 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 FAM174AQ8TBP5 190 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 BAP1Q92560 729 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 PCMTD1Q96MG8 357 aaPredicted RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 SLC17A9Q9BYT1 436 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 CAAP1Q9H8G2 361 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 NDFIP2Q9NV92 336 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 SEPT11Q9NVA2 429 aaKnown RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 EVA1BQ9NVM1 165 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 IPO11Q9UI26 975 aaKnown RBP12.99□□□□□ -0.33
CD44-203ENST00000278386 HPCAL4Q9UM19 191 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 ITM2BQ9Y287 266 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 FADS3Q9Y5Q0 445 aa12.99□□□□□ -0.33
CD44-203ENST00000278386 C2CD4BA6NLJ0 364 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 KRIT1O00522 736 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 AP1G1O43747 822 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 RAMP2O60895 175 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 PAK4O96013 591 aaPredicted RBP12.98□□□□□ -0.33
CD44-203ENST00000278386 MT-CO3P00414 261 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 CYP1A1P04798 512 aaPredicted RBP12.98□□□□□ -0.33
CD44-203ENST00000278386 UGT2B4P06133 528 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 RHOQP17081 205 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 MMP8P22894 467 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 ITPKBP27987 946 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 EIF2S3P41091 472 aaKnown RBP12.98□□□□□ -0.33
CD44-203ENST00000278386 ABL2P42684 1182 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 NSFP46459 744 aaKnown RBP12.98□□□□□ -0.33
CD44-203ENST00000278386 SNRPD1P62314 119 aaKnown RBP12.98□□□□□ -0.33
CD44-203ENST00000278386 E2F1Q01094 437 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 NRG1Q02297 640 aaPredicted RBP12.98□□□□□ -0.33
CD44-203ENST00000278386 SGCGQ13326 291 aa12.98□□□□□ -0.33
CD44-203ENST00000278386 PDE1CQ14123 709 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms