RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FAM95CA0A1B0GW59 222 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 SMIM24O75264 130 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 COX4I1P13073 169 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 PEX2P28328 305 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 SLC1A2P43004 574 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 PAPOLAP51003 745 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 KLF10Q13118 480 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 PSMD5Q16401 504 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 MORN1Q5T089 497 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 NAPEPLDQ6IQ20 393 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 BHLHA9Q7RTU4 235 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 ZC3HC1Q86WB0 502 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 PCDH20Q8N6Y1 951 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 NPAS2Q99743 824 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 TBL1YQ9BQ87 522 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 CDH19Q9H159 772 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 OSER1Q9NX31 292 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 CDH9Q9ULB4 789 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 HAS3O00219 553 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 FBXO21O94952 628 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 ODC1P11926 461 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 GRK2P25098 689 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 CDH13P55290 713 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 ACTR3P61158 418 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 GEN1Q17RS7 908 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 DNAL1Q4LDG9 190 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 THEMIS2Q5TEJ8 643 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 CFAP52Q8N1V2 620 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 BHMTQ93088 406 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 ZNF184Q99676 751 aaPredicted RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 IL22Q9GZX6 179 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 CDH22Q9UJ99 828 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 PLXNA1Q9UIW2 1896 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 LUC7L3O95232 432 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 ASGR1P07306 291 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 RAG1P15918 1043 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 ITGAXP20702 1163 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 CD86P42081 329 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 RPL34P49207 117 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 POLE2P56282 527 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 MRPS22P82650 360 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 DLG1Q12959 904 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 SEMA3BQ13214 749 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 XKR4Q5GH76 650 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 SH2D4BQ5SQS7 431 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 RNF111Q6ZNA4 994 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 ACMSDQ8TDX5 336 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 RCN3Q96D15 328 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 EXOC2Q96KP1 924 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 SMIM14Q96QK8 99 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 EBF3Q9H4W6 596 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 NMRK2Q9NPI5 230 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 IPO11Q9UI26 975 aaKnown RBP16.86■□□□□ 0.29
VPS54-201ENST00000272322 ACOT9Q9Y305 439 aa16.86■□□□□ 0.29
VPS54-201ENST00000272322 KLHL2O95198 593 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 HAPLN1P10915 354 aaPredicted RBP16.85■□□□□ 0.29
VPS54-201ENST00000272322 SLC10A7Q0GE19 358 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 GALNT2Q10471 571 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 ZNF195O14628 629 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 SLC35E2BP0CK96 405 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 KCNA5P22460 613 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 DSC2Q02487 901 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 HDAC11Q96DB2 347 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 KATNAL1Q9BW62 490 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 ADAMTS6Q9UKP5 1117 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 POMPQ9Y244 141 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 CDY1Q9Y6F8 540 aa16.85■□□□□ 0.29
VPS54-201ENST00000272322 DLX3O60479 287 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 CSPG5O95196 566 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 USP46P62068 366 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 YWHAHQ04917 246 aaPredicted RBP16.84■□□□□ 0.29
VPS54-201ENST00000272322 ALFQ53S48 1182 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 KCTD11Q693B1 232 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 TAF2Q6P1X5 1199 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 PIM3Q86V86 326 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 GALNT4Q8N4A0 578 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 IL1RL2Q9HB29 575 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 EIF2B3Q9NR50 452 aaKnown RBP16.84■□□□□ 0.29
VPS54-201ENST00000272322 GIMAP2Q9UG22 337 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 GTF2IRD1Q9UHL9 959 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 C5orf42Q9H799 3197 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 MYO7AQ13402 2215 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 SBF1O95248 1867 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 PRSS56P0CW18 603 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 AKR1A1P14550 325 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 STMN1P16949 149 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 TSPY1Q01534 308 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 ANO4Q32M45 955 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 TRMT5Q32P41 509 aaKnown RBP16.84■□□□□ 0.29
VPS54-201ENST00000272322 INTS6LQ5JSJ4 861 aaKnown RBP16.84■□□□□ 0.29
VPS54-201ENST00000272322 SEL1L3Q68CR1 1132 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 CENPLQ8N0S6 344 aaPredicted RBP16.84■□□□□ 0.29
VPS54-201ENST00000272322 BLOC1S5Q8TDH9 187 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 GCNAQ96QF7 691 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 DNAJB4Q9UDY4 337 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 ANGPTL2Q9UKU9 493 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 PCDHB12Q9Y5F1 795 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 F9P00740 461 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 RGS2P41220 211 aa16.84■□□□□ 0.29
VPS54-201ENST00000272322 FLT3LGP49771 235 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms