RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PRKCQQ04759 706 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 UPP1Q16831 310 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 PMF1Q6P1K2 205 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 C15orf39Q6ZRI6 1047 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 C12orf29Q8N999 325 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 GLMNQ92990 594 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 CERS2Q96G23 380 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 SPACA7Q96KW9 195 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 SFXN1Q9H9B4 322 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 WDR6Q9NNW5 1121 aaKnown RBP13.83□□□□□ -0.19
LDLR-201ENST00000252444 FAM237BA0A1B0GVD1 139 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 THRAP10827 490 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 NFKB1P19838 968 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 IL2P60568 153 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 CAP1Q01518 475 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 MROH9Q5TGP6 573 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 STAG3L4Q8TBR4 150 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 CCT7Q99832 543 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 TRMOQ9BU70 441 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 MFSD1Q9H3U5 465 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 DUS2Q9NX74 493 aaKnown RBP13.83□□□□□ -0.2
LDLR-201ENST00000252444 ZNF180Q9UJW8 692 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 IFNA14P01570 189 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 STXBP5Q5T5C0 1151 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 MFSD5Q6N075 450 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ZNF516Q92618 1163 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 VPS50Q96JG6 964 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 TMEM109Q9BVC6 243 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ZDHHC6Q9H6R6 413 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 BRD9Q9H8M2 597 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 COPS7BQ9H9Q2 264 aaPredicted RBP13.83□□□□□ -0.2
LDLR-201ENST00000252444 SSC5DA1L4H1 1573 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 WDR27A2RRH5 827 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ZBTB14O43829 449 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 LTA4HP09960 611 aaKnown RBP13.83□□□□□ -0.2
LDLR-201ENST00000252444 HIC1Q14526 733 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 CHI3L2Q15782 390 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 KLHL35Q6PF15 583 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 TAC4Q86UU9 113 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 DCLK2Q8N568 766 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 SH2D3CQ8N5H7 860 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 BRSK1Q8TDC3 778 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ACSS3Q9H6R3 686 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ETNK1Q9HBU6 452 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ZFP37Q9Y6Q3 630 aaPredicted RBP13.83□□□□□ -0.2
LDLR-201ENST00000252444 C15orf38-AP3S2A0A0A6YYH1 394 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 CCDC195A0A1B0GUA6 201 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 MLYCDO95822 493 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 OGNP20774 298 aaKnown RBP13.83□□□□□ -0.2
LDLR-201ENST00000252444 PSMB4P28070 264 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 PKN3Q6P5Z2 889 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 FAM47EQ6ZV65 393 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 ARPINQ7Z6K5 226 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 FEM1CQ96JP0 617 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 SOX13Q9UN79 622 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 LZTS1Q9Y250 596 aa13.83□□□□□ -0.2
LDLR-201ENST00000252444 EVPLLA8MZ36 301 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 AP2A1O95782 977 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 PHKG1Q16816 387 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 JOSD2Q8TAC2 188 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SLC35F5Q8WV83 523 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 NCLNQ969V3 563 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 PNKPQ96T60 521 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SLC2A11Q9BYW1 496 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SDCBP2Q9H190 292 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 ECT2Q9H8V3 914 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 KRCC1Q9NPI7 259 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 THAP1Q9NVV9 213 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 CCDC78A2IDD5 438 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 RPP40O75818 363 aaKnown RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 ITGBL1O95965 494 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 IGFBP4P22692 258 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SLC11A1P49279 550 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SEL1L3Q68CR1 1132 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 ANKS6Q68DC2 871 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 OTOP2Q7RTS6 562 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 OTOAQ7RTW8 1153 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SLC26A7Q8TE54 656 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 FUT8Q9BYC5 575 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 CHST7Q9NS84 486 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SELENONQ9NZV5 590 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 C5orf58C9J3I9 102 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 CACNB4O00305 520 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 PAPSS1O43252 624 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 TRIM13O60858 407 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 FSHRP23945 695 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 CD86P42081 329 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 CNTN1Q12860 1018 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 AHI1Q8N157 1196 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 SHISA4Q96DD7 197 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 FGD4Q96M96 766 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 TMEM237Q96Q45 408 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 GOLGA2P5Q9HBQ8 144 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 PHTF1Q9UMS5 762 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 M0QZQ0 153 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 OAZ2O95190 189 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 ENO3P13929 434 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 TAS2R40P59535 323 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 RPL7AP62424 266 aaKnown RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 MRPS25P82663 173 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms