RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ELP6Q0PNE2 266 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 AKAP4Q5JQC9 854 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC27A3Q5K4L6 730 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RNASEH2BQ5TBB1 312 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TIGD7Q6NT04 549 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PM20D2Q8IYS1 436 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NXPE1Q8N323 547 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 OR4C6Q8NH72 309 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KAT2AQ92830 837 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SUCNR1Q9BXA5 334 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DGCR6LQ9BY27 220 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CDH19Q9H159 772 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RANBP3Q9H6Z4 567 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A7Q9HAW7 530 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A10Q9HAW8 530 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A8Q9HAW9 530 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PI4KBQ9UBF8 816 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZNFX1Q9P2E3 1918 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RNF103-CHMP3A0A140T963 221 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LINGO3P0C6S8 592 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 BUD31P41223 144 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF33BQ06732 778 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DYRK1AQ13627 763 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FGL2Q14314 439 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RAP1GAP2Q684P5 730 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ARSKQ6UWY0 536 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FAM156AQ8NDB6 213 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF558Q96NG5 402 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GPR61Q9BZJ8 451 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 QRSL1Q9H0R6 528 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CD93Q9NPY3 652 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GPSM3Q9Y4H4 160 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UNC13CQ8NB66 2214 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TET2Q6N021 2002 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CECR2Q9BXF3 1484 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 WDR7Q9Y4E6 1490 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 AQP12BA6NM10 295 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PLD2O14939 933 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LGI1O95970 557 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 URODP06132 367 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM49P0CI25 452 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM49CP0CI26 452 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DNA2P51530 1060 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 POU4F3Q15319 338 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 EXOC3L4Q17RC7 722 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TM4SF20Q53R12 229 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PERM1Q5SV97 790 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SNX30Q5VWJ9 437 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PGBD2Q6P3X8 592 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FAM92BQ6ZTR7 304 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PRPF39Q86UA1 669 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RIBC1Q8N443 379 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 C19orf18Q8NEA5 215 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SAT2Q96F10 170 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CGREF1Q99674 301 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC13A1Q9BZW2 595 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RIMS4Q9H426 269 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TRABDQ9H4I3 376 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DNAJB9Q9UBS3 223 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RWDD2AQ9UIY3 292 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GGA1Q9UJY5 639 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TRPC5Q9UL62 973 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 MAPRE3Q9UPY8 281 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHGA6Q9Y5G7 932 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHGA10Q9Y5H3 936 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC12A7Q9Y666 1083 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF888P0CJ79 500 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PLCG1P19174 1290 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 EHHADHQ08426 723 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KIF19Q2TAC6 998 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SEZ6L2Q6UXD5 910 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ELMOD1Q8N336 334 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FAR1Q8WVX9 515 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KLC2Q9H0B6 622 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CLEC4MQ9H2X3 399 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SRA1Q9HD15 236 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CMTM6Q9NX76 183 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CYP8B1Q9UNU6 501 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 STARD10Q9Y365 291 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KMOO15229 486 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NUAK1O60285 661 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC2A3P11169 496 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ITGADQ13349 1161 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RIN1Q13671 783 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PTGISQ16647 500 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CHMP1BQ7LBR1 199 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 MIER2Q8N344 545 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 OXR1Q8N573 874 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TBC1D15Q8TC07 691 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KCTD13Q8WZ19 329 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TEKT3Q9BXF9 490 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UBP1Q9NZI7 540 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 WASF2Q9Y6W5 498 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 A0A0J9YVX5 310 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 L7N2F9 121 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LZTS3O60299 673 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ADRA1DP25100 572 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CYLC1P35663 651 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 VAMP2P63027 116 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PTPN12Q05209 780 aaKnown RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms