RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SKIDA1Q1XH10 827 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 DCAF6Q58WW2 860 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 PIP5KL1Q5T9C9 394 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 HORMAD1Q86X24 394 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 PTRH1Q86Y79 214 aaKnown RBP16.76■□□□□ 0.27
CLN3-264ENST00000637985 DCP2Q8IU60 420 aaKnown RBP16.76■□□□□ 0.27
CLN3-264ENST00000637985 UBR7Q8N806 425 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 FAM174AQ8TBP5 190 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 HTR3CQ8WXA8 447 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 NT5C1BQ96P26 610 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 FUCA2Q9BTY2 467 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 NUCKS1Q9H1E3 243 aaKnown RBP16.76■□□□□ 0.27
CLN3-264ENST00000637985 ADNPQ9H2P0 1102 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 HESX1Q9UBX0 185 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 TSPAN16Q9UKR8 245 aa16.76■□□□□ 0.27
CLN3-264ENST00000637985 C1QTNF3-AMACRE9PGA6 284 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 BIN1O00499 593 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 NTN3O00634 580 aaPredicted RBP16.75■□□□□ 0.27
CLN3-264ENST00000637985 TPP1O14773 563 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 MUSKO15146 869 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 PAEPP09466 180 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 WT1P19544 449 aaPredicted RBP16.75■□□□□ 0.27
CLN3-264ENST00000637985 UGT1A5P35504 534 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 MARSP56192 900 aaKnown RBP16.75■□□□□ 0.27
CLN3-264ENST00000637985 TBX4P57082 545 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 UBE2HP62256 183 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 CYP4F2P78329 520 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 BST2Q10589 180 aaKnown RBP16.75■□□□□ 0.27
CLN3-264ENST00000637985 LRMPQ12912 555 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 PAK1Q13153 545 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 SPIDRQ14159 915 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 GOLGA7BQ2TAP0 167 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 JAMLQ86YT9 394 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 SCML4Q8N228 414 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 FBXO39Q8N4B4 442 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 ZSCAN1Q8NBB4 408 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 BOCQ9BWV1 1114 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 KLF15Q9UIH9 416 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 CTNND2Q9UQB3 1225 aa16.75■□□□□ 0.27
CLN3-264ENST00000637985 SPTY2D1-AS1A0A0U1RR47 76 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 A6NNZ2 444 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 MCF2LO15068 1137 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 ALOX15BO15296 676 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 NVLO15381 856 aaKnown RBP16.74■□□□□ 0.27
CLN3-264ENST00000637985 AQP9O43315 295 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 FGFR1OPO95684 399 aaKnown RBP16.74■□□□□ 0.27
CLN3-264ENST00000637985 CD19P15391 556 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 CASRP41180 1078 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 CCR10P46092 362 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 VASPP50552 380 aaPredicted RBP16.74■□□□□ 0.27
CLN3-264ENST00000637985 DAOAP59103 153 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 SULT2A1Q06520 285 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 DEFB133Q30KQ1 61 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 MANEAQ5SRI9 462 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 OR6B2Q6IFH4 312 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 RAB11FIP2Q7L804 512 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 TRIM59Q8IWR1 403 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 LMO3Q8TAP4 145 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 NAT6Q93015 286 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 FCRL2Q96LA5 508 aaPredicted RBP16.74■□□□□ 0.27
CLN3-264ENST00000637985 BMFQ96LC9 184 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 CNGB3Q9NQW8 809 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 SEPT10Q9P0V9 454 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 HS3ST3A1Q9Y663 406 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 SCN8AQ9UQD0 1980 aa16.74■□□□□ 0.27
CLN3-264ENST00000637985 H3BM21 787 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 O00370 1275 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 SETSIPP0DME0 302 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 PLK1P53350 603 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 STX17P56962 302 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 SLC12A1Q13621 1099 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 STILQ15468 1287 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 HIST2H2BCQ6DN03 193 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 TMEM270Q6UE05 265 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 LCLAT1Q6UWP7 414 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 PTAR1Q7Z6K3 402 aaPredicted RBP16.73■□□□□ 0.27
CLN3-264ENST00000637985 B3GNT8Q7Z7M8 397 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 VASH2Q86V25 355 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 PARGQ86W56 976 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 SIX6OS1Q8N1H7 587 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 PPM1KQ8N3J5 372 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 EHBP1Q8NDI1 1231 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 KCTD13Q8WZ19 329 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 IL12RB2Q99665 862 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 CCDC3Q9BQI4 270 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 SRRTQ9BXP5 876 aaKnown RBP16.73■□□□□ 0.27
CLN3-264ENST00000637985 LRRC4CQ9HCJ2 640 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 CHMP5Q9NZZ3 219 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 KIAA1468Q9P260 1216 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 ZFR2Q9UPR6 939 aaKnown RBP16.73■□□□□ 0.27
CLN3-264ENST00000637985 PCDHB4Q9Y5E5 795 aa16.73■□□□□ 0.27
CLN3-264ENST00000637985 ZFC3H1O60293 1989 aaKnown RBP16.73■□□□□ 0.27
CLN3-264ENST00000637985 TRPM6Q9BX84 2022 aa16.72■□□□□ 0.27
CLN3-264ENST00000637985 TMX2-CTNND1H3BSU7 103 aa16.72■□□□□ 0.27
CLN3-264ENST00000637985 ATP9BO43861 1147 aa16.72■□□□□ 0.27
CLN3-264ENST00000637985 RPIAP49247 311 aa16.72■□□□□ 0.27
CLN3-264ENST00000637985 NUMBP49757 651 aa16.72■□□□□ 0.27
CLN3-264ENST00000637985 GCNT1Q02742 428 aa16.72■□□□□ 0.27
CLN3-264ENST00000637985 C1QBPQ07021 282 aaKnown RBP16.72■□□□□ 0.27
CLN3-264ENST00000637985 CNGA2Q16280 664 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms