RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 FLI1Q01543 452 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 LRRC74AQ0VAA2 488 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FAM76BQ5HYJ3 339 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 LAYNQ6UX15 382 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RASSF6Q6ZTQ3 369 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF571Q7Z3V5 609 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PLCZ1Q86YW0 608 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GLYCTKQ8IVS8 523 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SCML4Q8N228 414 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FNDC5Q8NAU1 212 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FANCBQ8NB91 859 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF555Q8NEP9 628 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 MCOLN3Q8TDD5 553 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SLC16A10Q8TF71 515 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 DEDD2Q8WXF8 326 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 NARS2Q96I59 477 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 EGLN2Q96KS0 407 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PKP2Q99959 881 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 TTPALQ9BTX7 342 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RACGAP1Q9H0H5 632 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SYNDIG1Q9H7V2 258 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SDHAF3Q9NRP4 125 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 DNAJC28Q9NX36 388 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ADAM30Q9UKF2 790 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PRELID3BQ9Y3B1 194 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 BOLA1Q9Y3E2 137 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ORC6Q9Y5N6 252 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SPATA31A3Q5VYP0 1347 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CROCC2H7BZ55 1655 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 PREX2Q70Z35 1606 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CCDC78A2IDD5 438 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ARHGAP33O14559 1287 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 FCER1AP12319 257 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SSTR3P32745 418 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 NPY2RP49146 381 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ABCE1P61221 599 aaKnown RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 BTN1A1Q13410 526 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 COTL1Q14019 142 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 HIF1AQ16665 826 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 BTBD16Q32M84 506 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 FCRLBQ6BAA4 426 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 DESI1Q6ICB0 168 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 TAF2Q6P1X5 1199 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 C16orf46Q6P387 395 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF790Q6PG37 636 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 KBTBD6Q86V97 674 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CHSY1Q86X52 802 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 RASAL3Q86YV0 1011 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CDH26Q8IXH8 852 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CMTR1Q8N1G2 835 aaKnown RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 AMER2Q8N7J2 671 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 MARCH10Q8NA82 808 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SLC30A5Q8TAD4 765 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 FBXO30Q8TB52 745 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ZSCAN18Q8TBC5 510 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 NSUN6Q8TEA1 469 aaKnown RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ARHGEF26Q96DR7 871 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF512Q96ME7 567 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 PAFAH2Q99487 392 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 RTKNQ9BST9 563 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ANKHQ9HCJ1 492 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CHST12Q9NRB3 414 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 HPF1Q9NWY4 346 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ZSWIM5Q9P217 1185 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 RAPGEFL1Q9UHV5 662 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 PACSIN3Q9UKS6 424 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 PCDHB13Q9Y5F0 798 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 IQGAP1P46940 1657 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 MYH1P12882 1939 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 A0A1W2PPM1 405 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 E2F8A0AVK6 867 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 OR5K4A6NMS3 321 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 A8MUA0 341 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 RIMBP2O15034 1052 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 GATCO43716 136 aaKnown RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SLITRK5O94991 958 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 HOXB7P09629 217 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 NCAM1P13591 858 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 AOC1P19801 751 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CD40LGP29965 261 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 MAGEA11P43364 429 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CDC20Q12834 499 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 PTK6Q13882 451 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 LEXMQ3ZCV2 418 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 FAM26FQ5R3K3 315 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 CCNJQ5T5M9 372 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 GRTP1Q5TC63 336 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF438Q7Z4V0 828 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF444Q8N0Y2 327 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 MPP5Q8N3R9 675 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 TMCO6Q96DC7 493 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SGTBQ96EQ0 304 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SUCLG2Q96I99 432 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 VCPIP1Q96JH7 1222 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 RIPOR3Q96MK2 946 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SLC29A1Q99808 456 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 SEC22CQ9BRL7 303 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 ADI1Q9BV57 179 aa5.81□□□□□ -1.48
SCN1A-216ENST00000637968 MRM3Q9HC36 420 aaKnown RBP5.81□□□□□ -1.48
SCN1A-216ENST00000637968 OSGEPQ9NPF4 335 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms