RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CITO14578 2027 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 IGKV6-21A0A0C4DH24 114 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 MEI4A8MW99 385 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 BOLA2-SMG1P6H3BVE0 249 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 DAB1O75553 588 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ALDH1A2O94788 518 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 TMCC1O94876 653 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 RTN3O95197 1032 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-214ENST00000637038 CLPTM1O96005 669 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 COL6A2P12110 1019 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 MGAT1P26572 445 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ALDH1A3P47895 512 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 HARS2P49590 506 aaKnown RBP4.05□□□□□ -1.76
SCN1A-214ENST00000637038 NUDT2P50583 147 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 TPI1P60174 286 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 SLC25A3Q00325 362 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 MPP3Q13368 585 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ORC1Q13415 861 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 LAMB3Q13751 1172 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ANO4Q32M45 955 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 INTS6LQ5JSJ4 861 aaKnown RBP4.05□□□□□ -1.76
SCN1A-214ENST00000637038 OR52E8Q6IFG1 317 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 LBX2Q6XYB7 198 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ZCCHC23Q6ZST2 131 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 EEPD1Q7L9B9 569 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 RABEPKQ7Z6M1 372 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 STRA8Q7Z7C7 330 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ACOT1Q86TX2 421 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 RSPH3Q86UC2 560 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 PDSS2Q86YH6 399 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 PQLC1Q8N2U9 271 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 PQLC3Q8N755 202 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 ANKRD52Q8NB46 1076 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 APPL2Q8NEU8 664 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 SP7Q8TDD2 431 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-214ENST00000637038 TSPAN17Q96FV3 270 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 CSPG4P5Q96PW8 444 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 KATNAL1Q9BW62 490 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 SPATA16Q9BXB7 569 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 NUF2Q9BZD4 464 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 PTPRHQ9HD43 1115 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 MOCS1Q9NZB8 636 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 IGSF9Q9P2J2 1179 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 VANGL2Q9ULK5 521 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 TMCO1Q9UM00 188 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 SCN1AP35498 2009 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 EVPLQ92817 2033 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 CHD5Q8TDI0 1954 aa4.05□□□□□ -1.76
SCN1A-214ENST00000637038 RRN3P2A6NIE6 340 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CXorf49A8MYA2 514 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 HDAC3O15379 428 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 DDHD2O94830 711 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 F9P00740 461 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LCP1P13796 627 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CYP2B6P20813 491 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ME2P23368 584 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 EDNRBP24530 442 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CST5P28325 142 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ADORA2BP29275 332 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 GNL1P36915 607 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 GLUD2P49448 558 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 IDH3AP50213 366 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 HDAC4P56524 1084 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ZXDAP98168 799 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KLF10Q13118 480 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 GRIN2CQ14957 1233 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TAF5Q15542 800 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RNF220Q5VTB9 566 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KRT80Q6KB66 452 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TREML1Q86YW5 311 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ARFGAP1Q8N6T3 406 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 HIPK4Q8NE63 616 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 GSTCDQ8NEC7 633 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PPHLN1Q8NEY8 458 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PYDC1Q8WXC3 89 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 DGCR14Q96DF8 476 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 MSANTD3Q96H12 275 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PEBP4Q96S96 227 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TASP1Q9H6P5 420 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NMRAL1Q9HBL8 299 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 FAM49BQ9NUQ9 324 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SIX4Q9UIU6 781 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PLA2G4CQ9UP65 541 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 FRMPD3Q5JV73 1810 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 A0A096LPK6 155 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 C2orf71A6NGG8 1288 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 AIM2O14862 343 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CFLARO15519 480 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PIAS1O75925 651 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 FAM58BPP0C7Q3 252 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 VCLP18206 1134 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ENPP1P22413 925 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PPARGP37231 505 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 MAGEA3P43357 314 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RPL14P50914 215 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RAB27AP51159 221 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LIMK2P53671 638 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SP2Q02086 613 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TLE2Q04725 743 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SLC12A1Q13621 1099 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms