RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 BEND5Q7L4P6 421 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 TAC4Q86UU9 113 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CCDC124Q96CT7 223 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 PARK7Q99497 189 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 KLHL4Q9C0H6 718 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 TASP1Q9H6P5 420 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SPATS2LQ9NUQ6 558 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CPSF2Q9P2I0 782 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 AAR2Q9Y312 384 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SCN4AP35499 1836 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 TK2O00142 265 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 ZMPSTE24O75844 475 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 DDHD2O94830 711 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 IGLV3-25P01717 112 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 UBTFL6P0CB48 400 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CCNCP24863 283 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CYP2C18P33260 490 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CPT1AP50416 773 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 NSUN2Q08J23 767 aaKnown RBP eCLIP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 EIF4EBP2Q13542 120 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SLC12A1Q13621 1099 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 USP10Q14694 798 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 HERC3Q15034 1050 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 UGP2Q16851 508 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SFT2D3Q587I9 215 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 NAIF1Q69YI7 327 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 OTOP3Q7RTS5 596 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CTU1Q7Z7A3 348 aaKnown RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SETD3Q86TU7 594 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 GDPD5Q8WTR4 605 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 EDEM1Q92611 657 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 LENG1Q96BZ8 264 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 TSNARE1Q96NA8 513 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 FCRL5Q96RD9 977 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 APBA2Q99767 749 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 PPP1R12CQ9BZL4 782 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 EBF3Q9H4W6 596 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 CACNG4Q9UBN1 327 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 STK39Q9UEW8 545 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 MEIS3P2A8K0S8 358 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 AHSGP02765 367 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 SRGAP2BP0DMP2 458 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 TFEBP19484 476 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 PCSK1P29120 753 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 LSM12Q3MHD2 195 aaKnown RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 ARL13AQ5H913 290 aaPredicted RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 MORN1Q5T089 497 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 DENND5AQ6IQ26 1287 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 C16orf89Q6UX73 402 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 CENPLQ8N0S6 344 aaPredicted RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 RP9Q8TA86 221 aaKnown RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 PTCD2Q8WV60 388 aaKnown RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 CELF6Q96J87 481 aaKnown RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 GPR78Q96P69 363 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 TUBGCP5Q96RT8 1024 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 TBL1YQ9BQ87 522 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 KATNAL1Q9BW62 490 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 MRM3Q9HC36 420 aaKnown RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 UBP1Q9NZI7 540 aa12.96□□□□□ -0.33
LINC00540-203ENST00000631321 TIMM13Q9Y5L4 95 aaPredicted RBP12.96□□□□□ -0.33
LINC00540-203ENST00000631321 ENO4A6NNW6 628 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 GOLGA8TH3BQL2 631 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 RNASEH1O60930 286 aaKnown RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 PIGNO95427 931 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 THP07101 528 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 MYL3P08590 195 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 GNAT1P11488 350 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 UQCRBP14927 111 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 RAG1P15918 1043 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 HOXC13P31276 330 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 HTR7P34969 479 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 ARCN1P48444 511 aaKnown RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 CLCNKBP51801 687 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 TCHHL1Q5QJ38 904 aaPredicted RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 ARHGAP12Q8IWW6 846 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 LSMEM2Q8N112 164 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 C3orf58Q8NDZ4 430 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 DQX1Q8TE96 717 aaKnown RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 PDCD6IPQ8WUM4 868 aaKnown RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 IL12RB2Q99665 862 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 RTP3Q9BQQ7 232 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 WDR55Q9H6Y2 383 aaPredicted RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 ARHGEF38Q9NXL2 777 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 MAGED2Q9UNF1 606 aaPredicted RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 RUVBL2Q9Y230 463 aaKnown RBP12.96□□□□□ -0.34
LINC00540-203ENST00000631321 TBC1D30Q9Y2I9 924 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 Q9Y3F1 56 aa12.96□□□□□ -0.34
LINC00540-203ENST00000631321 PHGDHO43175 533 aaKnown RBP12.95□□□□□ -0.34
LINC00540-203ENST00000631321 ANXA9O76027 345 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 PEX2P28328 305 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 RPL9P32969 192 aaKnown RBP12.95□□□□□ -0.34
LINC00540-203ENST00000631321 ADRA1AP35348 466 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 PPARGP37231 505 aaPredicted RBP12.95□□□□□ -0.34
LINC00540-203ENST00000631321 OGFRL1Q5TC84 451 aaPredicted RBP12.95□□□□□ -0.34
LINC00540-203ENST00000631321 MAP3K21Q5TCX8 1036 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 LPCAT4Q643R3 524 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 LRRC8EQ6NSJ5 796 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 FAM171BQ6P995 826 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 TMC7Q7Z402 723 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms