RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PCDH20Q8N6Y1 951 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 OR2T3Q8NH03 318 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 ISG20Q96AZ6 181 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 HEMGNQ9BXL5 484 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 OSBPL8Q9BZF1 889 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 MTG2Q9H4K7 406 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 DTLQ9NZJ0 730 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 FCF1Q9Y324 198 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 BNIP3LO60238 219 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 TMCC1O94876 653 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 GARSP41250 739 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 NR2C2P49116 596 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 ZNF211Q13398 564 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 ELAVL3Q14576 367 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 RFTN1Q14699 578 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 PDK1Q15118 436 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 ZNF569Q5MCW4 686 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 C9orf64Q5T6V5 341 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 SEL1L2Q5TEA6 688 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 TMCO4Q5TGY1 634 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 HEATR6Q6AI08 1181 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 ARHGAP36Q6ZRI8 547 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 BBS12Q6ZW61 710 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 DSG4Q86SJ6 1040 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 OR8D1Q8WZ84 308 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 PTPRN2Q92932 1015 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 ZNF599Q96NL3 588 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 PDFQ9HBH1 243 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 CD248Q9HCU0 757 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 EBF1Q9UH73 591 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 ACTL7AQ9Y615 435 aa19.46■□□□□ 0.71
SQSTM1-216ENST00000626660 CCDC163A0A0D9SF12 145 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 USP27XA6NNY8 438 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 PPP1R12AO14974 1030 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 AXIN1O15169 862 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 ALOX15BO15296 676 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 MAFKO60675 156 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 TJP3O95049 919 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 MAP3K6O95382 1288 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 CD160O95971 181 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 SP9P0CG40 484 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 TDGF1P13385 188 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 VAV1P15498 845 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 GABRG2P18507 467 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 PXNP49023 591 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 RHOAP61586 193 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 ZNF776Q68DI1 518 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 TIGD7Q6NT04 549 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 KIAA1324Q6UXG2 1013 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 RASSF3Q86WH2 238 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 TMPRSS6Q8IU80 811 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 STK40Q8N2I9 435 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 BBS5Q8N3I7 341 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 CCNYQ8ND76 341 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 PRCCQ92733 491 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 P3H4Q92791 437 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 BRD8Q9H0E9 1235 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 TNKS2Q9H2K2 1166 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 JRKLQ9Y4A0 524 aa19.45■□□□□ 0.7
SQSTM1-216ENST00000626660 KCNK3O14649 394 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 GSRP00390 522 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 NDUFV2P19404 249 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 FNTBP49356 437 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 SNRPD1P62314 119 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 SLC10A2Q12908 348 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 CARD16Q5EG05 197 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 NPNTQ6UXI9 565 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 LONP2Q86WA8 852 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 MDGA1Q8NFP4 955 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 TRIM44Q96DX7 344 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 SIPA1Q96FS4 1042 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 MRGPRX1Q96LB2 322 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 GDAP1L1Q96MZ0 367 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 TSGA13Q96PP4 275 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 CINPQ9BW66 212 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 TLR10Q9BXR5 811 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 TM6SF2Q9BZW4 377 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 IRF2BPLQ9H1B7 796 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 RSPH9Q9H1X1 276 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 CARD9Q9H257 536 aa19.44■□□□□ 0.7
SQSTM1-216ENST00000626660 APOC4-APOC2K7ER74 178 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 NEBLO76041 1014 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 IGSF6O95976 241 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 APOC2P02655 101 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 ACADMP11310 421 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 CCNCP24863 283 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 RENBPP51606 427 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 COPAP53621 1224 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 ZNF235Q14590 738 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 LBRQ14739 615 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 CYTH1Q15438 398 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 DCAF12L1Q5VU92 463 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 AADACL2Q6P093 401 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 WDR5BQ86VZ2 330 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 PLPP6Q8IY26 295 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 SLC35F6Q8N357 371 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 RYBPQ8N488 228 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 OR2AP1Q8NGE2 309 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 OR2A12Q8NGT7 310 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 HAUS1Q96CS2 278 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms