RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TM7SF3Q9NS93 570 aa5.57□□□□□ -1.52
VPS29-212ENST00000621131 WWOXQ9NZC7 414 aa5.57□□□□□ -1.52
VPS29-212ENST00000621131 LAMB4A4D0S4 1761 aa5.57□□□□□ -1.52
VPS29-212ENST00000621131 MRC1P22897 1456 aa5.57□□□□□ -1.52
VPS29-212ENST00000621131 CNTNAP2Q9UHC6 1331 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 ANO9A1A5B4 782 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 DPPA5A6NC42 116 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 PODXLO00592 558 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 PCDH17O14917 1159 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 HNRNPDLO14979 420 aaKnown RBP5.56□□□□□ -1.52
VPS29-212ENST00000621131 NKX2-8O15522 239 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 DDX58O95786 925 aaKnown RBP5.56□□□□□ -1.52
VPS29-212ENST00000621131 ANXA6P08133 673 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 MYL3P08590 195 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 TGM2P21980 687 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 HDAC1Q13547 482 aaPredicted RBP5.56□□□□□ -1.52
VPS29-212ENST00000621131 GRM4Q14833 912 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 RAB30Q15771 203 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 AAK1Q2M2I8 961 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 IZUMO3Q5VZ72 239 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 WDR93Q6P2C0 686 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 TRAPPC11Q7Z392 1133 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 C11orf96Q7Z7L8 435 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 CLMNQ96JQ2 1002 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 FAR2Q96K12 515 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 ZPBPQ9BS86 351 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 EPS8L2Q9H6S3 715 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 SPAG4Q9NPE6 437 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 MIS18AQ9NYP9 233 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 THSD7AQ9UPZ6 1657 aa5.56□□□□□ -1.52
VPS29-212ENST00000621131 RASA4BC9J798 803 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 M0QYT0 321 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 RASA4O43374 803 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 EIF5BO60841 1220 aaKnown RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 CER1O95813 267 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 GLP2RO95838 553 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 IFNA2P01563 188 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 IGFBP2P18065 325 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 EIF2S2P20042 333 aaKnown RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 CIITAP33076 1130 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 ANP32AP39687 249 aaKnown RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 SHC2P98077 582 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 HLTFQ14527 1009 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS29-212ENST00000621131 MPEG1Q2M385 716 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 ARL6IP4Q66PJ3 421 aaKnown RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 FBXO38Q6PIJ6 1188 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 ADGRF3Q8IZF5 1079 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 OR2C3Q8N628 320 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 CENPIQ92674 756 aaPredicted RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 INPP5DQ92835 1189 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 GCC1Q96CN9 775 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 DBF4Q9UBU7 674 aaPredicted RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 RGPD3A6NKT7 1758 aaPredicted RBP5.55□□□□□ -1.52
VPS29-212ENST00000621131 RGPD4Q7Z3J3 1758 aa5.55□□□□□ -1.52
VPS29-212ENST00000621131 NRAPQ86VF7 1730 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 NOTCH4Q99466 2003 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 ERVV-2B6SEH9 535 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 PRR23D1E9PI22 279 aaPredicted RBP5.54□□□□□ -1.52
VPS29-212ENST00000621131 RHODO00212 210 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 PLA2G6O60733 806 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 PRR23D2P0DMB1 279 aaPredicted RBP5.54□□□□□ -1.52
VPS29-212ENST00000621131 T-ENOLP0DO92 83 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 HSPA7P48741 367 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 FOXL2P58012 376 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 KRT24Q2M2I5 525 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 ZNF790Q6PG37 636 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 CCAR1Q8IX12 1150 aaKnown RBP5.54□□□□□ -1.52
VPS29-212ENST00000621131 RPAP2Q8IXW5 612 aaPredicted RBP5.54□□□□□ -1.52
VPS29-212ENST00000621131 KAT2AQ92830 837 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 ZNF479Q96JC4 524 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 SFXN1Q9H9B4 322 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 UPF2Q9HAU5 1272 aaKnown RBP5.54□□□□□ -1.52
VPS29-212ENST00000621131 HYPKQ9NX55 129 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 TNNQ9UQP3 1299 aa5.54□□□□□ -1.52
VPS29-212ENST00000621131 KDM6AO15550 1401 aaPredicted RBP5.54□□□□□ -1.52
VPS29-212ENST00000621131 PAPPAQ13219 1627 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 SLC28A2O43868 658 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 CDC25AP30304 524 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 RPL15P61313 204 aaKnown RBP5.53□□□□□ -1.52
VPS29-212ENST00000621131 GAD2Q05329 585 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 NEXNQ0ZGT2 675 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 LRIG3Q6UXM1 1119 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 TRABD2AQ86V40 505 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 TXNRD2Q9NNW7 524 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS29-212ENST00000621131 TMOD3Q9NYL9 352 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 IGSF9Q9P2J2 1179 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 C5P01031 1676 aa5.53□□□□□ -1.52
VPS29-212ENST00000621131 UBR2Q8IWV8 1755 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 TNS2Q63HR2 1409 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 ATP10DQ9P241 1426 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 C4orf47A7E2U8 309 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 FOXO6A8MYZ6 492 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 H0YGN5 161 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 TNFRSF13BO14836 293 aaPredicted RBP5.52□□□□□ -1.53
VPS29-212ENST00000621131 IGHDP01880 384 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 NGFRP08138 427 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 CYP3A4P08684 503 aa5.52□□□□□ -1.53
VPS29-212ENST00000621131 UBTFL1P0CB47 393 aaPredicted RBP5.52□□□□□ -1.53
VPS29-212ENST00000621131 ZXDBP98169 803 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms