RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RABGEF1Q9UJ41 708 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 SLC8A2Q9UPR5 921 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 INPPL1O15357 1258 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 RFC2P35250 354 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 SERPINB9P50453 376 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 ARCQ7LC44 396 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 C2orf15Q8WU43 125 aaKnown RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 MKI67P46013 3256 aaKnown RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 CRCPO75575 148 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 CTBP1Q13363 440 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 CXXC1Q9P0U4 656 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 ZSWIM8A7E2V4 1837 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 DCLK1O15075 740 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 PPIDQ08752 370 aaKnown RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 PAFAH1B3Q15102 231 aaKnown RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 ZRANB3Q5FWF4 1079 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 RASSF4Q9H2L5 321 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 PRDM4Q9UKN5 801 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 CHKBQ9Y259 395 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 FARP1Q9Y4F1 1045 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 GRXCR1A8MXD5 290 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 NEMP1O14524 444 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 KCNJ11Q14654 390 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 POM121L1PQ3SYA9 428 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 CD300LGQ6UXG3 332 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 HS6ST3Q8IZP7 471 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 TTC8Q8TAM2 541 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 CERS2Q96G23 380 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 PRDM16Q9HAZ2 1276 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 SEPT3Q9UH03 358 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 USP3Q9Y6I4 520 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 A0A0D9SEW6 157 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 STX7O15400 261 aaKnown RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 XYLBO75191 536 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 ATF6P18850 670 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 NSUN2Q08J23 767 aaKnown RBP eCLIP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 LBRQ14739 615 aaKnown RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 CRYMQ14894 314 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 PSRC1Q6PGN9 363 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 TRAF7Q6Q0C0 670 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 SLC39A11Q8N1S5 342 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 AZIN2Q96A70 460 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 RPL10LQ96L21 214 aaKnown RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 SHCBP1LQ9BZQ2 653 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 TLE6Q9H808 572 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 SLC17A7Q9P2U7 560 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 CXorf49A8MYA2 514 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 AP3B1O00203 1094 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 PFDN6O15212 129 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 MATN3O15232 486 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 ZNF189O75820 626 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 HLA-DQB2P05538 268 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 GSTA1P08263 222 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 GSTA2P09210 222 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 GNA12Q03113 381 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 RAD51Q06609 339 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 WASHC5Q12768 1159 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 DPYSQ14117 519 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 RCN2Q14257 317 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 SPATA21Q7Z572 469 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 SDCCAG8Q86SQ7 713 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-213ENST00000620219 CCNJLQ8IV13 435 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 LRRC39Q96DD0 335 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 GBA3Q9H227 469 aa15.97■□□□□ 0.15
CPSF1-213ENST00000620219 PHGDHO43175 533 aaKnown RBP15.96■□□□□ 0.15
CPSF1-213ENST00000620219 CCNCP24863 283 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 SLC1A5Q15758 541 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 PPP2R3CQ969Q6 453 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 ZNF840PA6NDX5 716 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 AP2A1O95782 977 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 ABHD2P08910 425 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 TBC1D1Q86TI0 1168 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-213ENST00000620219 OXCT2Q9BYC2 517 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-213ENST00000620219 ABCF3Q9NUQ8 709 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 PCDHGC4Q9Y5F7 938 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 LRRC37A2A6NM11 1700 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 TPSB2P20231 275 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 TPSAB1Q15661 275 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 RETSATQ6NUM9 610 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 ALKBH8Q96BT7 664 aaKnown RBP15.96■□□□□ 0.15
CPSF1-213ENST00000620219 HDAC11Q96DB2 347 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 BBS2Q9BXC9 721 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 IL22Q9GZX6 179 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 PPCSQ9HAB8 311 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 CRYL1Q9Y2S2 319 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 HBS1LQ9Y450 684 aaKnown RBP15.96■□□□□ 0.15
CPSF1-213ENST00000620219 PCDHA11Q9Y5I1 949 aa15.96■□□□□ 0.15
CPSF1-213ENST00000620219 TBC1D4O60343 1298 aa15.96■□□□□ 0.14
CPSF1-213ENST00000620219 HSPA4LO95757 839 aa15.96■□□□□ 0.14
CPSF1-213ENST00000620219 NPY2RP49146 381 aa15.96■□□□□ 0.14
CPSF1-213ENST00000620219 SERPINH1P50454 418 aaKnown RBP15.96■□□□□ 0.14
CPSF1-213ENST00000620219 CSE1LP55060 971 aaKnown RBP15.96■□□□□ 0.14
CPSF1-213ENST00000620219 LRRC8BQ6P9F7 803 aa15.96■□□□□ 0.14
CPSF1-213ENST00000620219 CMC1Q7Z7K0 106 aa15.96■□□□□ 0.14
CPSF1-213ENST00000620219 MYLK4Q86YV6 388 aaPredicted RBP15.96■□□□□ 0.14
CPSF1-213ENST00000620219 BPIFA1Q9NP55 256 aa15.96■□□□□ 0.14
CPSF1-213ENST00000620219 NEDD8-MDP1E9PL57 170 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 SEMA5AQ13591 1074 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 CHI3L2Q15782 390 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 TMCO4Q5TGY1 634 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms