RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 BST1Q10588 318 aa14.73□□□□□ -0.05
SHROOM1-208ENST00000617339 GIPC2Q8TF65 315 aa14.73□□□□□ -0.05
SHROOM1-208ENST00000617339 ATP2A3Q93084 1043 aa14.73□□□□□ -0.05
SHROOM1-208ENST00000617339 C20orf96Q9NUD7 363 aaPredicted RBP14.73□□□□□ -0.05
SHROOM1-208ENST00000617339 ADAMTS6Q9UKP5 1117 aa14.73□□□□□ -0.05
SHROOM1-208ENST00000617339 DERAQ9Y315 318 aa14.73□□□□□ -0.05
SHROOM1-208ENST00000617339 LOC100653049A0A140TA62 436 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 BCLAF3A2AJT9 711 aaKnown RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 KRT34O76011 436 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TM7SF2O76062 418 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 PCSK1P29120 753 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 CRABP2P29373 138 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 ACTR3P61158 418 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 PDK1Q15118 436 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TAZQ16635 292 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 OTUD1Q5VV17 481 aaPredicted RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 ACAD11Q709F0 780 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 IARS2Q9NSE4 1012 aaKnown RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 SLC45A1Q9Y2W3 748 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 CAPN8A6NHC0 703 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 PHGDHO43175 533 aaKnown RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 INHAP05111 366 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 PIRTP0C851 137 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 FUT4P22083 530 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 CHRNA4P43681 627 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 YWHAHQ04917 246 aaPredicted RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 ZBTB17Q13105 803 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 ZNF460Q14592 562 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TMCO2Q7Z6W1 182 aaPredicted RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 DHDDSQ86SQ9 333 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TDRPQ86YL5 185 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 RBM12BQ8IXT5 1001 aaKnown RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 ZNF276Q8N554 614 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TOP6BLQ8N6T0 577 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 GSDMBQ8TAX9 411 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 MIPOL1Q8TD10 442 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 NPY6RQ99463 290 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 EBF4Q9BQW3 602 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 KLHL4Q9C0H6 718 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 SLC39A10Q9ULF5 831 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 AK5Q9Y6K8 562 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TBKBP1A7MCY6 615 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TMCC1O94876 653 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 FAM163BP0C2L3 166 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 IRF1P10914 325 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 RPL17P18621 184 aaKnown RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 LHX1P48742 406 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 ADARP55265 1226 aaKnown RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 LPIN1Q14693 890 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 N4BP2L1Q5TBK1 243 aaPredicted RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 VWA5B1Q5TIE3 1220 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 FAM219BQ5XKK7 198 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TRIM42Q8IWZ5 723 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TAGLN3Q9UI15 199 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 PCDHB7Q9Y5E2 793 aa14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 HEMK1Q9Y5R4 338 aaPredicted RBP14.72□□□□□ -0.05
SHROOM1-208ENST00000617339 TTC36A6NLP5 189 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 ODC1P11926 461 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 ZFXP17010 805 aaPredicted RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 WASHC5Q12768 1159 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 CTBP1Q13363 440 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 MSLNQ13421 630 aaPredicted RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 STRA8Q7Z7C7 330 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 ZDHHC17Q8IUH5 632 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 DCLK2Q8N568 766 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 NCSTNQ92542 709 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 SMARCD1Q96GM5 515 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 CNBD2Q96M20 576 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PLAC1Q9HBJ0 212 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 MAN1C1Q9NR34 630 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 TSR3Q9UJK0 312 aaKnown RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PCDHGB4Q9UN71 923 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PCDHGB5Q9Y5G0 923 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 C15orf38-AP3S2A0A0A6YYH1 394 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 A0A0J9YVX5 310 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 DDHD2O94830 711 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PABPC4LP0CB38 370 aaKnown RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 UQCRBP14927 111 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 RAP1GDS1P52306 607 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 KRT72Q14CN4 511 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PRKD1Q15139 912 aaPredicted RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 UPP1Q16831 310 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 SH2D4BQ5SQS7 431 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 ZNF534Q76KX8 674 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 ARPINQ7Z6K5 226 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PDSS2Q86YH6 399 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 ACVR1CQ8NER5 493 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 DQX1Q8TE96 717 aaKnown RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 PDCD6IPQ8WUM4 868 aaKnown RBP14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 SCYL1Q96KG9 808 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 S100A14Q9HCY8 104 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 BLOC1S6Q9UL45 172 aa14.71□□□□□ -0.05
SHROOM1-208ENST00000617339 HOXD8P13378 290 aaPredicted RBP14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 WARSP23381 471 aaKnown RBP14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 HPCAP84074 193 aa14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 STRADAQ7RTN6 431 aa14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 LDB1Q86U70 411 aaPredicted RBP14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 E2F7Q96AV8 911 aa14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 FCRL3Q96P31 734 aaPredicted RBP14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 ARHGEF38Q9NXL2 777 aa14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms