RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 DPY19L3Q6ZPD9 716 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 ERN2Q76MJ5 926 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 TMC6Q7Z403 805 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 IQCHQ86VS3 1027 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 HORMAD1Q86X24 394 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 DCAF4L2Q8NA75 395 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 TMIEQ8NEW7 156 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 SLC20A1Q8WUM9 679 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 RAB6CQ9H0N0 254 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 VPS16Q9H269 839 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 METTL5Q9NRN9 209 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 ARID1BQ8NFD5 2236 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 NBEAQ8NFP9 2946 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 MYLKQ15746 1914 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 TRIM38O00635 465 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 SIGLEC6O43699 453 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 GJB6O95452 261 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 C1SP09871 688 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 CKMT2P17540 419 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 AKT2P31751 481 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 CDH5P33151 784 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 KLK7P49862 253 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 HS1BP3Q53T59 392 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 TCP11X2Q5H9J9 407 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 RETSATQ6NUM9 610 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 LEKR1Q6ZMV7 388 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 NT5C3BQ969T7 300 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 FAM131CQ96AQ9 280 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 PGAP3Q96FM1 320 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 CRELD1Q96HD1 420 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 C1orf74Q96LT6 269 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 STK33Q9BYT3 514 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 ZYG11BQ9C0D3 744 aa17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 FCF1Q9Y324 198 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-223ENST00000600552 MYF5P13349 255 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 OVGP1Q12889 678 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 C15orf59Q2T9L4 293 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 ZNF284Q2VY69 593 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 SFMBT2Q5VUG0 894 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 FBXL19Q6PCT2 694 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 PTAR1Q7Z6K3 402 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 SLC25A45Q8N413 288 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 OR13H1Q8NG92 308 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 OR6K2Q8NGY2 324 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 SLC30A5Q8TAD4 765 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 NXPE2Q96DL1 559 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 PPP1R16AQ96I34 528 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 PCMTD1Q96MG8 357 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 HAPLN3Q96S86 360 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 NAA15Q9BXJ9 866 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 TM6SF2Q9BZW4 377 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 ZDHHC6Q9H6R6 413 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 NLRC4Q9NPP4 1024 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 UCKL1Q9NWZ5 548 aa17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 ZFR2Q9UPR6 939 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 COL5A1P20908 1838 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-223ENST00000600552 TRPM6Q9BX84 2022 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 DOCK4Q8N1I0 1966 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 ILVBLA1L0T0 632 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 F8VZ95 297 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 LSM8O95777 96 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 HNRNPA2B1P22626 353 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 GKP32189 559 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 ACVRL1P37023 503 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 SCNN1AP37088 669 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 CLCN6P51797 869 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 POLR2FP61218 127 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 NOMO3P69849 1222 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 GNA12Q03113 381 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 CARD16Q5EG05 197 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 Q6ZSR6 202 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 KANSL1Q7Z3B3 1105 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 ZNF354CQ86Y25 554 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 RXFP2Q8WXD0 754 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 TSC1Q92574 1164 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 HEPHQ9BQS7 1158 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 C11orf70Q9BRQ4 267 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 MAGEB5Q9BZ81 275 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 FAM207AQ9NSI2 230 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 DNAJC28Q9NX36 388 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 DKK4Q9UBT3 224 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 DNAI1Q9UI46 699 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 TMEM59LQ9UK28 342 aa17.94■□□□□ 0.46
SHKBP1-223ENST00000600552 ASXL3Q9C0F0 2248 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 IGLV3-10A0A075B6K4 115 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 PAK4O96013 591 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 CDK4P11802 303 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 DGKAP23743 735 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 SERPINH1P50454 418 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 CCNHP51946 323 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 NEK3P51956 506 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 NEK5Q6P3R8 708 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 KDM7AQ6ZMT4 941 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 EPS8L1Q8TE68 723 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 HDAC8Q9BY41 377 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 OSBPL2Q9H1P3 480 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 SEPT11Q9NVA2 429 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 KLHL11Q9NVR0 708 aa17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 HECAQ9UBI9 543 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-223ENST00000600552 OR12D3Q9UGF7 316 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms