RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 TMCO4Q5TGY1 634 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 C22orf39Q6P5X5 142 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 BZW1Q7L1Q6 419 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 BMP8AQ7Z5Y6 402 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 CREG2Q8IUH2 290 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 TMEM105Q8N8V8 129 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 TTC13Q8NBP0 860 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 CCDC26Q8TAB7 109 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 SLC35B2Q8TB61 432 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 ACTRT1Q8TDG2 376 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 C1orf54Q8WWF1 131 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 MAML1Q92585 1016 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 CAPZA3Q96KX2 299 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 GABRG3Q99928 467 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 LHX3Q9UBR4 397 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 MMP17Q9ULZ9 603 aa20.38■□□□□ 0.85
SHKBP1-222ENST00000600320 NPC1O15118 1278 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 MATN3O15232 486 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 RBP3P10745 1247 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 NNMTP40261 264 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 CLCN5P51795 746 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 CLCN6P51797 869 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 GEMIN4P57678 1058 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 XRCC4Q13426 336 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 LBRQ14739 615 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 ACCSLQ4AC99 568 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 HSF5Q4G112 596 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 INO80DQ53TQ3 878 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 SLC45A4Q5BKX6 768 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 TIGD7Q6NT04 549 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 KIAA1211LQ6NV74 962 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 Q6ZVU0 165 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 TRMT11Q7Z4G4 463 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 TFB1MQ8WVM0 346 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 PTPRN2Q92932 1015 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 ZNF599Q96NL3 588 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 TNKS2Q9H2K2 1166 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 DNPEPQ9ULA0 475 aa20.37■□□□□ 0.85
SHKBP1-222ENST00000600320 A0A1W2PQF6 199 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 HACD1B0YJ81 288 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 KCNK1O00180 336 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 PGRMC1O00264 195 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 PDE2AO00408 941 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 MCF2LO15068 1137 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 MUSKO15146 869 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 SIN3BO75182 1162 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 EPHX1P07099 455 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 HOXB2P14652 356 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 RBL1P28749 1068 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 RGRP47804 291 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 ZBTB17Q13105 803 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 MTAPQ13126 283 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 RFTN1Q14699 578 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 HNRNPA1L2Q32P51 320 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 EOGTQ5NDL2 527 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 TMEM92Q6UXU6 159 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 PGBD5Q8N414 524 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 FBXL6Q8N531 539 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 TEX26Q8N6G2 289 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 PRELID2Q8N945 189 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 CASKIN2Q8WXE0 1202 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 ZNF592Q92610 1267 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 FATE1Q969F0 183 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 TM6SF2Q9BZW4 377 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 CEP44Q9C0F1 390 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 BRD8Q9H0E9 1235 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 CD248Q9HCU0 757 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 PRSS16Q9NQE7 514 aa20.36■□□□□ 0.85
SHKBP1-222ENST00000600320 KIF2AO00139 706 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 LIASO43766 372 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 NRLP54845 237 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 ZNF33AQ06730 810 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 SNX1Q13596 522 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 E2F5Q15329 346 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 C9orf64Q5T6V5 341 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 SDE2Q6IQ49 451 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 CDKL3Q8IVW4 592 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 PCDH20Q8N6Y1 951 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 TSEN2Q8NCE0 465 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 MAIP1Q8WWC4 291 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 EXOC2Q96KP1 924 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 IL12RB2Q99665 862 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 AP1M1Q9BXS5 423 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 CEP41Q9BYV8 373 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 SEPT3Q9UH03 358 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 SUN2Q9UH99 717 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 CKAP5Q14008 2032 aa20.35■□□□□ 0.85
SHKBP1-222ENST00000600320 EDDM13A0A1B0GTR0 161 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 BNIP3LO60238 219 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 JCHAINP01591 159 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 TUBB4AP04350 444 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 CCNB1P14635 433 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 MMP13P45452 471 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 RHOAP61586 193 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 IFI35P80217 286 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 WASHC5Q12768 1159 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 CAMK2GQ13555 558 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 HNRNPDQ14103 355 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 CRY1Q16526 586 aa20.34■□□□□ 0.85
SHKBP1-222ENST00000600320 ATXN7L2Q5T6C5 722 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms