RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PCDH18Q9HCL0 1135 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 OLA1Q9NTK5 396 aaKnown RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 USP36Q9P275 1121 aaKnown RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 THAP10Q9P2Z0 257 aaPredicted RBP13.01□□□□□ -0.33
UPF1-208ENST00000600012 RNF14Q9UBS8 474 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 FZD10Q9ULW2 581 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 ATRXP46100 2492 aa13.01□□□□□ -0.33
UPF1-208ENST00000600012 hCG_1818297A0A087WSY0 165 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CTAGE15A4D2H0 777 aa13□□□□□ -0.33
UPF1-208ENST00000600012 MEI4A8MW99 385 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CYBBP04839 570 aa13□□□□□ -0.33
UPF1-208ENST00000600012 HMBSP08397 361 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CTAGE8P0CG41 777 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CORO1AP31146 461 aaKnown RBP13□□□□□ -0.33
UPF1-208ENST00000600012 GGCXP38435 758 aa13□□□□□ -0.33
UPF1-208ENST00000600012 IL12RB1P42701 662 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CDKN2BP42772 138 aa13□□□□□ -0.33
UPF1-208ENST00000600012 ADCY2Q08462 1091 aa13□□□□□ -0.33
UPF1-208ENST00000600012 GRIK2Q13002 908 aa13□□□□□ -0.33
UPF1-208ENST00000600012 MMRN1Q13201 1228 aa13□□□□□ -0.33
UPF1-208ENST00000600012 EIF4EBP2Q13542 120 aaPredicted RBP13□□□□□ -0.33
UPF1-208ENST00000600012 DPYSL3Q14195 570 aa13□□□□□ -0.33
UPF1-208ENST00000600012 EIF4HQ15056 248 aaKnown RBP13□□□□□ -0.33
UPF1-208ENST00000600012 GEN1Q17RS7 908 aa13□□□□□ -0.33
UPF1-208ENST00000600012 PPP6R3Q5H9R7 873 aaPredicted RBP13□□□□□ -0.33
UPF1-208ENST00000600012 KAZNQ674X7 775 aa13□□□□□ -0.33
UPF1-208ENST00000600012 ZNF572Q7Z3I7 529 aaPredicted RBP13□□□□□ -0.33
UPF1-208ENST00000600012 RAB44Q7Z6P3 723 aaPredicted RBP13□□□□□ -0.33
UPF1-208ENST00000600012 CTAGE6Q86UF2 777 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CTAGE4Q8IX94 777 aa13□□□□□ -0.33
UPF1-208ENST00000600012 PYROXD2Q8N2H3 581 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CHCHD4Q8N4Q1 142 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CADM4Q8NFZ8 388 aa13□□□□□ -0.33
UPF1-208ENST00000600012 DNASE2BQ8WZ79 361 aa13□□□□□ -0.33
UPF1-208ENST00000600012 NTAN1Q96AB6 310 aa13□□□□□ -0.33
UPF1-208ENST00000600012 P2RY11Q96G91 374 aa13□□□□□ -0.33
UPF1-208ENST00000600012 TOE1Q96GM8 510 aaKnown RBP13□□□□□ -0.33
UPF1-208ENST00000600012 CALN1Q9BXU9 219 aa13□□□□□ -0.33
UPF1-208ENST00000600012 MKRN2Q9H000 416 aaKnown RBP13□□□□□ -0.33
UPF1-208ENST00000600012 TKTL2Q9H0I9 626 aa13□□□□□ -0.33
UPF1-208ENST00000600012 ITM2CQ9NQX7 267 aa13□□□□□ -0.33
UPF1-208ENST00000600012 WSB2Q9NYS7 404 aaPredicted RBP13□□□□□ -0.33
UPF1-208ENST00000600012 MARCH2Q9P0N8 246 aa13□□□□□ -0.33
UPF1-208ENST00000600012 TTC7AQ9ULT0 858 aaPredicted RBP13□□□□□ -0.33
UPF1-208ENST00000600012 PCDHB9Q9Y5E1 797 aa13□□□□□ -0.33
UPF1-208ENST00000600012 SNX10Q9Y5X0 201 aa13□□□□□ -0.33
UPF1-208ENST00000600012 KNL1Q8NG31 2342 aa13□□□□□ -0.33
UPF1-208ENST00000600012 CABIN1Q9Y6J0 2220 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 A0A1B0GTW7 788 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 SLC12A8A0AV02 714 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 KRIT1O00522 736 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 SH3BP5O60239 455 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 SYNCRIPO60506 623 aaKnown RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 MAOBP27338 520 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 OXTRP30559 389 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 L1CAMP32004 1257 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 ADRA1BP35368 520 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 CETN2P41208 172 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 TBX4P57082 545 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 COPS2P61201 443 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 TRIP4Q15650 581 aaPredicted RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 TRIP6Q15654 476 aaKnown RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 DPYSL2Q16555 572 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 TAZQ16635 292 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 ARL13BQ3SXY8 428 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 TFDP3Q5H9I0 405 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 EFHC2Q5JST6 749 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 TEX35Q5T0J7 233 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 TMPRSS6Q8IU80 811 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 NAXDQ8IW45 347 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 CPXM2Q8N436 756 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 NOA1Q8NC60 698 aaKnown RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 SPATA4Q8NEY3 305 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 FCRL2Q96LA5 508 aaPredicted RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 GPR174Q9BXC1 333 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 SLC2A11Q9BYW1 496 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 WDCPQ9H6R7 721 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 ELOVL2Q9NXB9 296 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 ARHGEF38Q9NXL2 777 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.99□□□□□ -0.336e-7■■■■■ 32.1
UPF1-208ENST00000600012 AGO1Q9UL18 857 aaKnown RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 TLR6Q9Y2C9 796 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 V9GYY5 206 aaPredicted RBP12.99□□□□□ -0.33
UPF1-208ENST00000600012 ZZEF1O43149 2961 aa12.99□□□□□ -0.33
UPF1-208ENST00000600012 NUMA1Q14980 2115 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 SHROOM3Q8TF72 1996 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 MOCS2O96007 188 aaPredicted RBP12.98□□□□□ -0.33
UPF1-208ENST00000600012 IGLV3-19P01714 112 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 CCR1P32246 355 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 PTPN7P35236 360 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 TPMTP51580 245 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 DYNLT1P63172 113 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 SCAPQ12770 1279 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 ZNF234Q14588 700 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 PDK2Q15119 407 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 SIX1Q15475 284 aaPredicted RBP12.98□□□□□ -0.33
UPF1-208ENST00000600012 PPP2R5EQ16537 467 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 BRMS1LQ5PSV4 323 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 RFX6Q8HWS3 928 aa12.98□□□□□ -0.33
UPF1-208ENST00000600012 DENND1CQ8IV53 801 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms