RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CREB5Q02930 508 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 LMNB2Q03252 620 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 CST6Q15828 149 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 TTC31Q49AM3 519 aaPredicted RBP11.31□□□□□ -0.6
LIG1-211ENST00000596457 C22orf39Q6P5X5 142 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 SLC36A4Q6YBV0 504 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 TMEM139Q8IV31 216 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 UMODL1-AS1Q8N2C9 162 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 TOE1Q96GM8 510 aaKnown RBP11.31□□□□□ -0.6
LIG1-211ENST00000596457 CCDC114Q96M63 670 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 CSPG4P5Q96PW8 444 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 GPR174Q9BXC1 333 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 TM6SF2Q9BZW4 377 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 RSPH9Q9H1X1 276 aaPredicted RBP11.31□□□□□ -0.6
LIG1-211ENST00000596457 GOLPH3Q9H4A6 298 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 FBRSQ9HAH7 460 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 ETNK2Q9NVF9 386 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 DONSONQ9NYP3 566 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 HS3ST2Q9Y278 367 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 REXO2Q9Y3B8 237 aaKnown RBP11.31□□□□□ -0.6
LIG1-211ENST00000596457 EP300Q09472 2414 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 SHROOM3Q8TF72 1996 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 SPTBN2O15020 2390 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 A0A1W2PP55 124 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 FAM47DPA6NHR8 397 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 J3KR12 359 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 PLK4O00444 970 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 BUB1BO60566 1050 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 RNASEH2AO75792 299 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 MTA2O94776 668 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 KRT1P04264 644 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 HOXB3P14651 431 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 KDELR1P24390 212 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 OXTRP30559 389 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 SERPINH1P50454 418 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 ZNF135P52742 658 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 NDST2P52849 883 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 GEMIN4P57678 1058 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 SLC20A2Q08357 652 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 SPEM2Q0P670 501 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 SERINC3Q13530 473 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 DPYSQ14117 519 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 DPYSL3Q14195 570 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 PARP15Q460N3 678 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 CARD16Q5EG05 197 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 PMS2CLQ68D20 193 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 TMCO3Q6UWJ1 677 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 ARHGAP36Q6ZRI8 547 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 C11orf74Q86VG3 221 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 MAP7D3Q8IWC1 876 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 TP53INP2Q8IXH6 220 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 RGL4Q8IZJ4 473 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 HDDC3Q8N4P3 179 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 NPWQ8N729 165 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 CHST14Q8NCH0 376 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 PIP4K2CQ8TBX8 421 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 GRIN3AQ8TCU5 1115 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 RNF25Q96BH1 459 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 ZC3H10Q96K80 434 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 PABPC3Q9H361 631 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 SP110Q9HB58 689 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 FBXL12Q9NXK8 326 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 WSB2Q9NYS7 404 aaPredicted RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 USP36Q9P275 1121 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 ALG6Q9Y672 507 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 DUSP10Q9Y6W6 482 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 ATXN2Q99700 1313 aaKnown RBP11.3□□□□□ -0.6
LIG1-211ENST00000596457 OTOGLQ3ZCN5 2332 aa11.3□□□□□ -0.6
LIG1-211ENST00000596457 LRRD1A4D1F6 860 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ZSCAN5CA6NGD5 496 aaPredicted RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 MEI4A8MW99 385 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 C1QTNF3-AMACRE9PGA6 284 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 KPNA3O00505 521 aaPredicted RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 CD160O95971 181 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ADH1BP00325 375 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 CHRNA3P32297 505 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ACSL1P33121 698 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 SLC1A1P43005 524 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 VASPP50552 380 aaPredicted RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 CLCN6P51797 869 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 VAV2P52735 878 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 METAP1P53582 386 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ELAVL3Q14576 367 aaKnown RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 PDK2Q15119 407 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ANKRD20A8PQ5CZ79 823 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ARSIQ5FYB1 569 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ATXN7L2Q5T6C5 722 aaPredicted RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 DPY19L3Q6ZPD9 716 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 CYP2U1Q7Z449 544 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 DSG4Q86SJ6 1040 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 DAAM2Q86T65 1068 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 METTL3Q86U44 580 aaKnown RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 ARHGAP12Q8IWW6 846 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 RHOT1Q8IXI2 618 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 LZTR1Q8N653 840 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 PCDH20Q8N6Y1 951 aaKnown RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 OR2A12Q8NGT7 310 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 OR6K2Q8NGY2 324 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 SNX19Q92543 992 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms