RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 BNIP3Q12983 259 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 EIF4HQ15056 248 aaKnown RBP13.22□□□□□ -0.29
SCAF1-202ENST00000595242 LONRF2Q1L5Z9 754 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 TMEM215Q68D42 235 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 KIAA0895LQ68EN5 471 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 MON1BQ7L1V2 547 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 FAM35AQ86V20 835 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 PHF13Q86YI8 300 aaPredicted RBP13.22□□□□□ -0.29
SCAF1-202ENST00000595242 MCOLN2Q8IZK6 566 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 ELMO3Q96BJ8 720 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 ZNF653Q96CK0 615 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 MED10Q9BTT4 135 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 FUT8Q9BYC5 575 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 GOLPH3Q9H4A6 298 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 DMAP1Q9NPF5 467 aaPredicted RBP13.22□□□□□ -0.29
SCAF1-202ENST00000595242 CYLDQ9NQC7 956 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 GDF3Q9NR23 364 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 PCDHB4Q9Y5E5 795 aa13.22□□□□□ -0.29
SCAF1-202ENST00000595242 LRRK2Q5S007 2527 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 NYNRINQ9P2P1 1898 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 FAM47DPA6NHR8 397 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 BHMG1C9JSJ3 638 aaPredicted RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 MAP2K7O14733 419 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 TERTO14746 1132 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 MDM4O15151 490 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 TIMM44O43615 452 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 DXOO77932 396 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 SEC31AO94979 1220 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 LSM8O95777 96 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ACP1P24666 158 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 GNA15P30679 374 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 CDH5P33151 784 aaPredicted RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 CHKAP35790 457 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 PLA2G4AP47712 749 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 RPS14P62263 151 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 TNNC1P63316 161 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 GABREP78334 506 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ZBTB16Q05516 673 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 TRPC3Q13507 836 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ZNF699Q32M78 642 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 WDR72Q3MJ13 1102 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 MAP9Q49MG5 647 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 TMEM270Q6UE05 265 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ZNF574Q6ZN55 896 aaPredicted RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 PAQR9Q6ZVX9 377 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ZNF366Q8N895 744 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ZNF564Q8TBZ8 553 aaPredicted RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 SMARCD1Q96GM5 515 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 MS4A14Q96JA4 679 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 FBXO44Q9H4M3 255 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 OSER1Q9NX31 292 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 SMARCAL1Q9NZC9 954 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ANKMY1Q9P2S6 941 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 NUDT5Q9UKK9 219 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 CLEC4EQ9ULY5 219 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 PCDHGC3Q9UN70 934 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 ALG6Q9Y672 507 aa13.21□□□□□ -0.29
SCAF1-202ENST00000595242 TLN1Q9Y490 2541 aaKnown RBP13.21□□□□□ -0.29
SCAF1-202ENST00000595242 RELNP78509 3460 aa13.21□□□□□ -0.3
SCAF1-202ENST00000595242 K7ENP7 123 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 STC2O76061 302 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 BEST1O76090 585 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 KLKB1P03952 638 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 CD38P28907 300 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 C1QBPQ07021 282 aaKnown RBP13.2□□□□□ -0.3
SCAF1-202ENST00000595242 PTP4A2Q12974 167 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 TTC31Q49AM3 519 aaPredicted RBP13.2□□□□□ -0.3
SCAF1-202ENST00000595242 C6orf132Q5T0Z8 1188 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 C8orf74Q6P047 294 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 INO80CQ6PI98 192 aaPredicted RBP13.2□□□□□ -0.3
SCAF1-202ENST00000595242 ZSWIM1Q9BR11 485 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 LRRC1Q9BTT6 524 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 NUP85Q9BW27 656 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 UBXN6Q9BZV1 441 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 TMEM245Q9H330 911 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 EBF2Q9HAK2 575 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 AASDHPPTQ9NRN7 309 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 KRT82Q9NSB4 513 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 CISHQ9NSE2 258 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 STIM2Q9P246 746 aa13.2□□□□□ -0.3
SCAF1-202ENST00000595242 CNOT8Q9UFF9 292 aaKnown RBP13.2□□□□□ -0.3
SCAF1-202ENST00000595242 UTP20O75691 2785 aaKnown RBP13.2□□□□□ -0.3
SCAF1-202ENST00000595242 WNT9AO14904 365 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 CEP104O60308 925 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 USP12O75317 370 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 AP1G2O75843 785 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 SASH3O75995 380 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 CLSTN1O94985 981 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 CTNNA1P35221 906 aaKnown RBP13.19□□□□□ -0.3
SCAF1-202ENST00000595242 NSFP46459 744 aaKnown RBP13.19□□□□□ -0.3
SCAF1-202ENST00000595242 LSSP48449 732 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 PEX5P50542 639 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 FNDC3BQ53EP0 1204 aaKnown RBP13.19□□□□□ -0.3
SCAF1-202ENST00000595242 C10orf120Q5SQS8 335 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 KLHDC10Q6PID8 442 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 ATG14Q6ZNE5 492 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 KANSL1Q7Z3B3 1105 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 UBL4BQ8N7F7 174 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 EIF1ADQ8N9N8 165 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms