RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 FAM71BQ8TC56 605 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 GANCQ8TET4 914 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 TSC1Q92574 1164 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 PIGKQ92643 395 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 FOXJ1Q92949 421 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 ISG20Q96AZ6 181 aaKnown RBP14.84□□□□□ -0.03
VRK3-206ENST00000594090 SLC39A8Q9C0K1 460 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 SMOC1Q9H4F8 434 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 SGK2Q9HBY8 427 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 LUC7LQ9NQ29 371 aaKnown RBP14.84□□□□□ -0.03
VRK3-206ENST00000594090 VPS45Q9NRW7 570 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 PPM1HQ9ULR3 514 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 FZD4Q9ULV1 537 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 PCDHA13Q9Y5I0 950 aa14.84□□□□□ -0.03
VRK3-206ENST00000594090 EPN1Q9Y6I3 576 aaPredicted RBP14.84□□□□□ -0.03
VRK3-206ENST00000594090 ATXN2Q99700 1313 aaKnown RBP14.84□□□□□ -0.03
VRK3-206ENST00000594090 ARHGAP42A6NI28 874 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 BUB1O43683 1085 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 RNASEH2AO75792 299 aaKnown RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 TMCC1O94876 653 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 SEMA4FO95754 770 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 ZNF806P0C7X5 589 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 CHRNA3P32297 505 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 DRD3P35462 400 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 DPP6P42658 865 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 RECQLP46063 649 aaPredicted RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 ARSEP51690 589 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 METAP1P53582 386 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 SF3A2Q15428 464 aaKnown RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 ATP13A4Q4VNC1 1196 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 FAM46CQ5VWP2 391 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 PEAR1Q5VY43 1037 aaPredicted RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 RAD9BQ6WBX8 426 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 DPY19L3Q6ZPD9 716 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 SYT12Q8IV01 421 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 TMEM139Q8IV31 216 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 CHST14Q8NCH0 376 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 BAG1Q99933 345 aaPredicted RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 OMDQ99983 421 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 TM6SF2Q9BZW4 377 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 PCED1AQ9H1Q7 454 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 NEUROG2Q9H2A3 272 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 PDFQ9HBH1 243 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 KLHL11Q9NVR0 708 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 RCOR3Q9P2K3 495 aaPredicted RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 IL36AQ9UHA7 158 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 PILRBQ9UKJ0 227 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 MFHAS1Q9Y4C4 1052 aa14.83□□□□□ -0.03
VRK3-206ENST00000594090 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.83□□□□□ -0.03
VRK3-206ENST00000594090 CFAP54Q96N23 3096 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 PIEZO1Q92508 2521 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 MEI4A8MW99 385 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 KRT7P08729 469 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 CD48P09326 243 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 AMPD1P23109 780 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 HOXD12P35452 270 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 PAPOLAP51003 745 aaKnown RBP14.83□□□□□ -0.04
VRK3-206ENST00000594090 DNA2P51530 1060 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 CCNHP51946 323 aaPredicted RBP14.83□□□□□ -0.04
VRK3-206ENST00000594090 HADHBP55084 474 aaKnown RBP14.83□□□□□ -0.04
VRK3-206ENST00000594090 MMRN1Q13201 1228 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 DPYSL3Q14195 570 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 POM121L1PQ3SYA9 428 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 CARD16Q5EG05 197 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 SYCP2LQ5T4T6 812 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 TCEAL6Q6IPX3 200 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 TMCO3Q6UWJ1 677 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 PLPP6Q8IY26 295 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 LZTR1Q8N653 840 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 NETO2Q8NC67 525 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 GRIN3AQ8TCU5 1115 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 CASKIN2Q8WXE0 1202 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 TCEAL3Q969E4 200 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 FAM131CQ96AQ9 280 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 C6orf106Q9H6K1 298 aaPredicted RBP14.83□□□□□ -0.04
VRK3-206ENST00000594090 TMEM74BQ9NUR3 256 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 ETNK2Q9NVF9 386 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 UBA2Q9UBT2 640 aaPredicted RBP14.83□□□□□ -0.04
VRK3-206ENST00000594090 TFR2Q9UP52 801 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 WASF2Q9Y6W5 498 aa14.83□□□□□ -0.04
VRK3-206ENST00000594090 FAM186AA6NE01 2351 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 A0A0A6YYK5 440 aaPredicted RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 METTL12A8MUP2 240 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 GOLGA6L6A8MZA4 724 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 J3KR12 359 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 RNF103O00237 685 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 DFFAO00273 331 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 PLK4O00444 970 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 FOXD2O60548 495 aaPredicted RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 PRAMEF11O60813 436 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 IPO7O95373 1038 aaKnown RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 GSRP00390 522 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 PRNPP04156 253 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 IL4RP24394 825 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 NOP2P46087 812 aaKnown RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 ADPRHP54922 357 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 SNRPD1P62314 119 aaKnown RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 LMNB2Q03252 620 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 PDK2Q15119 407 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 INO80DQ53TQ3 878 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms