RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 GSDMDP57764 484 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 CREB5Q02930 508 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 SPEM2Q0P670 501 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 PDK2Q15119 407 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 INO80DQ53TQ3 878 aaPredicted RBP12.13□□□□□ -0.47
LIG3-213ENST00000590630 LYSMD4Q5XG99 296 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 AFMIDQ63HM1 303 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 TMCO3Q6UWJ1 677 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 CYP2U1Q7Z449 544 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 TMEM139Q8IV31 216 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 MAP7D3Q8IWC1 876 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 PLPP6Q8IY26 295 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 DCLK2Q8N568 766 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 GANCQ8TET4 914 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 ZNF419Q96HQ0 510 aaPredicted RBP12.13□□□□□ -0.47
LIG3-213ENST00000590630 CALR3Q96L12 384 aaKnown RBP12.13□□□□□ -0.47
LIG3-213ENST00000590630 OMDQ99983 421 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 ZNF670Q9BS34 389 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 KLC2Q9H0B6 622 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 BTBD1Q9H0C5 482 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 ARRDC1-AS1Q9H2J1 176 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 SGK2Q9HBY8 427 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 FBXL12Q9NXK8 326 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 PPM1HQ9ULR3 514 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 DCHS1Q96JQ0 3298 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 A0A1W2PP55 124 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 RNASEH2AO75792 299 aaKnown RBP12.12□□□□□ -0.47
LIG3-213ENST00000590630 SEMA4FO95754 770 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 PRNPP04156 253 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 CHRNA3P32297 505 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 SERPINB6P35237 376 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 GJC1P36383 396 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 NOP2P46087 812 aaKnown RBP12.12□□□□□ -0.47
LIG3-213ENST00000590630 ARSEP51690 589 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 TAS2R40P59535 323 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 ZNF33AQ06730 810 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 DPYSL3Q14195 570 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 CSRP2Q16527 193 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 PLA2G2CQ5R387 149 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 SYCP2LQ5T4T6 812 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 LRRC38Q5VT99 294 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 RAD9BQ6WBX8 426 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 DPY19L3Q6ZPD9 716 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 FAM124AQ86V42 546 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 CPNE8Q86YQ8 564 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 SYT12Q8IV01 421 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 ARHGAP12Q8IWW6 846 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 AADATQ8N5Z0 425 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 NPWQ8N729 165 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 KCTD6Q8NC69 237 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 TMIEQ8NEW7 156 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 PIP4K2CQ8TBX8 421 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 CELF6Q96J87 481 aaKnown RBP12.12□□□□□ -0.47
LIG3-213ENST00000590630 HSPA12BQ96MM6 686 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 GPR174Q9BXC1 333 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 CALN1Q9BXU9 219 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 SLC39A8Q9C0K1 460 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 TNKS2Q9H2K2 1166 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 VPS45Q9NRW7 570 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 SEMA4GQ9NTN9 838 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 IL36AQ9UHA7 158 aa12.12□□□□□ -0.47
LIG3-213ENST00000590630 FCF1Q9Y324 198 aaKnown RBP12.12□□□□□ -0.47
LIG3-213ENST00000590630 ANKRD36A6QL64 1941 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 SLC7A4O43246 635 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 SPOPO43791 374 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 PRAMEF11O60813 436 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 TMCC1O94876 653 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 GSRP00390 522 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 CD48P09326 243 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 ZNF806P0C7X5 589 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 TGM1P22735 817 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 AMPD1P23109 780 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 IL4RP24394 825 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 ACSL1P33121 698 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 DRD3P35462 400 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 PAPOLAP51003 745 aaKnown RBP12.11□□□□□ -0.47
LIG3-213ENST00000590630 DNA2P51530 1060 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 CCNHP51946 323 aaPredicted RBP12.11□□□□□ -0.47
LIG3-213ENST00000590630 SNRPD1P62314 119 aaKnown RBP12.11□□□□□ -0.47
LIG3-213ENST00000590630 CCDC15Q0P6D6 951 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 ATP13A4Q4VNC1 1196 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 CARD16Q5EG05 197 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 WDR45BQ5MNZ6 344 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 ZFYVE27Q5T4F4 411 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 PEAR1Q5VY43 1037 aaPredicted RBP12.11□□□□□ -0.47
LIG3-213ENST00000590630 ARMCX6Q7L4S7 300 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 RABEPKQ7Z6M1 372 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 VSIG1Q86XK7 387 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 SLC41A1Q8IVJ1 513 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 TXLNBQ8N3L3 684 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 HDDC3Q8N4P3 179 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 OR2AP1Q8NGE2 309 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 FAM131CQ96AQ9 280 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 PPP1R16AQ96I34 528 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 LRIG1Q96JA1 1093 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 TM6SF2Q9BZW4 377 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 NEUROG2Q9H2A3 272 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 PDFQ9HBH1 243 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 PARD6AQ9NPB6 346 aa12.11□□□□□ -0.47
LIG3-213ENST00000590630 UBA2Q9UBT2 640 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms