RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 TYW5A2RUC4 315 aaKnown RBP20.18■□□□□ 0.82
TRIM47-204ENST00000587339 PMPCBO75439 489 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 ALDH1A2O94788 518 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 C1RP00736 705 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 CHN1P15882 459 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 PFKLP17858 780 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 ETFBP38117 255 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 MAXP61244 160 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 TNK2Q07912 1038 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 CRYMQ14894 314 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 SHHQ15465 462 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 CERCAMQ5T4B2 595 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 LEKR1Q6ZMV7 388 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 SLC26A11Q86WA9 606 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 ZNF599Q96NL3 588 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 SAMD11Q96NU1 681 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 SPON2Q9BUD6 331 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 PDFQ9HBH1 243 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 KCNK9Q9NPC2 374 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 SH3BP1Q9Y3L3 701 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 RPS6KL1Q9Y6S9 549 aa20.18■□□□□ 0.82
TRIM47-204ENST00000587339 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 TMEM120BA0PK00 339 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 CXorf49A8MYA2 514 aaPredicted RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 NRG2O14511 850 aaPredicted RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 ATP9BO43861 1147 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 FGF19O95750 216 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 EPCAMP16422 314 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 PTPN2P17706 415 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 HOXD9P28356 352 aaPredicted RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 CCR2P41597 374 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 MPP3Q13368 585 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 TTC17Q96AE7 1141 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 TMA16Q96EY4 203 aaKnown RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 IMP4Q96G21 291 aaKnown RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 SLC46A2Q9BY10 475 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 PPANQ9NQ55 473 aaKnown RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 CFAP97Q9P2B7 532 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 IQANK1A0A1B0GTG1 560 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 MAGEB16A2A368 324 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 FAM159BA6NKW6 160 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 TBL1XO60907 577 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 CLASP2O75122 1294 aaKnown RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 TPH1P17752 444 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 HOXA9P31269 272 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 LSP1P33241 339 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 EPHA5P54756 1037 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 ZNF235Q14590 738 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 PDE12Q6L8Q7 609 aaKnown RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 HTR3DQ70Z44 454 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 HJURPQ8NCD3 748 aaPredicted RBP20.17■□□□□ 0.82
TRIM47-204ENST00000587339 FICDQ9BVA6 458 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 SMYD2Q9NRG4 433 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 VPS45Q9NRW7 570 aa20.17■□□□□ 0.82
TRIM47-204ENST00000587339 H0Y626 953 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 ADRA1AP35348 466 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 MAGEA10P43363 369 aaPredicted RBP20.16■□□□□ 0.82
TRIM47-204ENST00000587339 OXCT1P55809 520 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 GPM6BQ13491 265 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 SPANXN3Q5MJ09 141 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 CXorf57Q6NSI4 855 aaKnown RBP20.16■□□□□ 0.82
TRIM47-204ENST00000587339 TMEM135Q86UB9 458 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 CDKL2Q92772 493 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 MRGPRX2Q96LB1 330 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 SMC6Q96SB8 1091 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 POLR1EQ9GZS1 481 aaKnown RBP20.16■□□□□ 0.82
TRIM47-204ENST00000587339 MUC3BQ9H195 1237 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 TRABDQ9H4I3 376 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 ATP13A1Q9HD20 1204 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 INTS9Q9NV88 658 aaKnown RBP20.16■□□□□ 0.82
TRIM47-204ENST00000587339 DNMT3BQ9UBC3 853 aaKnown RBP20.16■□□□□ 0.82
TRIM47-204ENST00000587339 ZNF510Q9Y2H8 683 aa20.16■□□□□ 0.82
TRIM47-204ENST00000587339 PER2O15055 1255 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 KDELR3O43731 214 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 HNRNPA1P09651 372 aaKnown RBP eCLIP20.15■□□□□ 0.82
TRIM47-204ENST00000587339 CD86P42081 329 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 DSC2Q02487 901 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 PCSK7Q16549 785 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 GPR158Q5T848 1215 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 KDELC2Q7Z4H8 507 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 FAM217AQ8IXS0 508 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 BBS5Q8N3I7 341 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 PGBD5Q8N414 524 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 CARNMT1Q8N4J0 409 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 SHKBP1Q8TBC3 707 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 KIF9Q9HAQ2 790 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 HAUS2Q9NVX0 235 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 ZNF180Q9UJW8 692 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 MTCL1Q9Y4B5 1905 aaKnown RBP20.15■□□□□ 0.82
TRIM47-204ENST00000587339 A0A1W2PPM1 405 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 XYLBO75191 536 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 USP1O94782 785 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 RHOP08100 348 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 AVPR1AP37288 418 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 WNT3AP56704 352 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 ERVK-21P61565 698 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 NIPAL4Q0D2K0 466 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 RNF219Q5W0B1 726 aaPredicted RBP20.15■□□□□ 0.82
TRIM47-204ENST00000587339 CES3Q6UWW8 571 aa20.15■□□□□ 0.82
TRIM47-204ENST00000587339 RANBP10Q6VN20 620 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms