RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 C3orf62Q6ZUJ4 267 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 RBM23Q86U06 439 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 FAM217AQ8IXS0 508 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 KLHDC8BQ8IXV7 354 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 CARNMT1Q8N4J0 409 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 HJURPQ8NCD3 748 aaPredicted RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 OR52K2Q8NGK3 314 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 SPATA22Q8NHS9 363 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 GDPD5Q8WTR4 605 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 ARNTL2Q8WYA1 636 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 MRRFQ96E11 262 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 STAMBPL1Q96FJ0 436 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 PKNOX2Q96KN3 472 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 EBNA1BP2Q99848 306 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 APOL2Q9BQE5 337 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 TRIM56Q9BRZ2 755 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 SPON2Q9BUD6 331 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 PBX4Q9BYU1 374 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 SMG9Q9H0W8 520 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 MAGEH1Q9H213 219 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 ACSS3Q9H6R3 686 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 LRRC40Q9H9A6 602 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 PLAC1Q9HBJ0 212 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 CASS4Q9NQ75 786 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 SYBUQ9NX95 663 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 LGALS13Q9UHV8 139 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 MSRAQ9UJ68 235 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 A0A0D9SEW6 157 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ILVBLA1L0T0 632 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 SDR42E2A6NKP2 422 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 GFRA2O00451 464 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 SPAG6O75602 509 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ANXA9O76027 345 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 MT-CYBP00156 380 aaPredicted RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 GSTA2P09210 222 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 GLDCP23378 1020 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ATP1A2P50993 1020 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 MAXP61244 160 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 CRADDP78560 199 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ITKQ08881 620 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 LBRQ14739 615 aaKnown RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 KLHL38Q2WGJ6 581 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 TNFAIP8L3Q5GJ75 292 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 PRSS36Q5K4E3 855 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 TMCO4Q5TGY1 634 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 MARC1Q5VT66 337 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 RNF219Q5W0B1 726 aaPredicted RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 IL31Q6EBC2 164 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 CXorf57Q6NSI4 855 aaKnown RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 CASC4Q6P4E1 433 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 KDM7AQ6ZMT4 941 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 HTR3DQ70Z44 454 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 GRASPQ7Z6J2 395 aaPredicted RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 TDRPQ86YL5 185 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 BBS7Q8IWZ6 715 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 CYP4X1Q8N118 509 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 RIBC1Q8N443 379 aaPredicted RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 TEX26Q8N6G2 289 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 IPMKQ8NFU5 416 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ZNF707Q96C28 371 aaPredicted RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 TMA16Q96EY4 203 aaKnown RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 XPO6Q96QU8 1125 aaKnown RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 TBL1YQ9BQ87 522 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 FICDQ9BVA6 458 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 PRKD2Q9BZL6 878 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 LMAN2LQ9H0V9 348 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 STMN4Q9H169 189 aaPredicted RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 SLC25A51Q9H1U9 297 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 TASP1Q9H6P5 420 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 TLE6Q9H808 572 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 PDFQ9HBH1 243 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ATP13A1Q9HD20 1204 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 EURLQ9NYK6 297 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 TBK1Q9UHD2 729 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 SLC24A2Q9UI40 661 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ADAM21Q9UKJ8 722 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ARHGAP26Q9UNA1 814 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 ZNF510Q9Y2H8 683 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 AAR2Q9Y312 384 aaKnown RBP10.7□□□□□ -0.7
SS18-217ENST00000580958 HCFC2Q9Y5Z7 792 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 CHD9Q3L8U1 2897 aa10.7□□□□□ -0.7
SS18-217ENST00000580958 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 CCDC195A0A1B0GUA6 201 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 TCRBV9S1A1TA0A576 114 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 TYW5A2RUC4 315 aaKnown RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 EPOPA6NHQ4 379 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 FOXO6A8MYZ6 492 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 KDELR3O43731 214 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 CDH16O75309 829 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 PMPCBO75439 489 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 PIAS1O75925 651 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 LUC7L3O95232 432 aaKnown RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 POU2F2P09086 479 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 CEBPBP17676 345 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 STX2P32856 288 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 NRIP1P48552 1158 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 GEMIN4P57678 1058 aaKnown RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 PPP2R2AP63151 447 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms