RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CNTN1Q12860 1018 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 TEAD4Q15561 434 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 SPECC1LQ69YQ0 1117 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 ZNF354CQ86Y25 554 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 TMIEQ8NEW7 156 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 FAM131CQ96AQ9 280 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 PEBP4Q96S96 227 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 SNRNP25Q9BV90 132 aaKnown RBP24.38■■□□□ 1.49
SHMT1-206ENST00000579558 DHX35Q9H5Z1 703 aaKnown RBP24.38■■□□□ 1.49
SHMT1-206ENST00000579558 OSGEPQ9NPF4 335 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 IL36AQ9UHA7 158 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 SPTBN2O15020 2390 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 CNOT1A5YKK6 2376 aaKnown RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3DA0A087WVF3 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3IA0A087WXS9 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3EA0A087X179 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3KA0A087X1G2 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 CXorf51AA0A1B0GTR3 108 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 A0A1B0GVT2 93 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 A0A1W2PPC4 97 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3FA6NER0 549 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 WASH4PA8MWX3 477 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3LB9A6J9 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 KPNA3O00505 521 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 FGF10O15520 208 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 PRPSAP2O60256 369 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 ZNF821O75541 412 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 CD160O95971 181 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3HP0C7X1 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 MIPP30301 263 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 HTR7P34969 479 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 CSNK1EP49674 416 aaKnown RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 CCR5P51681 352 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TRIM14Q14142 442 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 ERMARDQ5T6L9 678 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 AGBL4Q5VU57 503 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3GQ6DHY5 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3CQ6IPX1 549 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 PSAPL1Q6NUJ1 521 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 DPY19L3Q6ZPD9 716 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 TBC1D3Q8IZP1 549 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 GRIN3AQ8TCU5 1115 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 ORAI3Q9BRQ5 295 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 THAP2Q9H0W7 228 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 NOL6Q9H6R4 1146 aaKnown RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 DNAAF2Q9NVR5 837 aaKnown RBP24.37■■□□□ 1.49
SHMT1-206ENST00000579558 ARHGAP20Q9P2F6 1191 aa24.37■■□□□ 1.49
SHMT1-206ENST00000579558 EIF3CLB5ME19 914 aaKnown RBP24.36■■□□□ 1.49
SHMT1-206ENST00000579558 PLRG1O43660 514 aaKnown RBP24.36■■□□□ 1.49
SHMT1-206ENST00000579558 KDELR3O43731 214 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 LRCH4O75427 683 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 CSRP1P21291 193 aaKnown RBP24.36■■□□□ 1.49
SHMT1-206ENST00000579558 BNC1Q01954 994 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 CA9Q16790 459 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 CARD16Q5EG05 197 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 ARSIQ5FYB1 569 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 ALKBH5Q6P6C2 394 aaKnown RBP24.36■■□□□ 1.49
SHMT1-206ENST00000579558 IL27RAQ6UWB1 636 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 LEKR1Q6ZMV7 388 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 EIF3CQ99613 913 aaKnown RBP24.36■■□□□ 1.49
SHMT1-206ENST00000579558 NCAPGQ9BPX3 1015 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 KDM4CQ9H3R0 1056 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 DYRK4Q9NR20 520 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 TPX2Q9ULW0 747 aaKnown RBP24.36■■□□□ 1.49
SHMT1-206ENST00000579558 PLXNA2O75051 1894 aa24.36■■□□□ 1.49
SHMT1-206ENST00000579558 C10orf142B7Z368 130 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 EEF2KO00418 725 aaKnown RBP24.35■■□□□ 1.49
SHMT1-206ENST00000579558 ADRB1P08588 477 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 HNRNPH3P31942 346 aaKnown RBP24.35■■□□□ 1.49
SHMT1-206ENST00000579558 GRIA4P48058 902 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 YBEYP58557 167 aaPredicted RBP24.35■■□□□ 1.49
SHMT1-206ENST00000579558 PPP2CBP62714 309 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 PPP2CAP67775 309 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 CCDC122Q5T0U0 273 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 ADAT2Q7Z6V5 191 aaKnown RBP24.35■■□□□ 1.49
SHMT1-206ENST00000579558 DEFB124Q8NES8 71 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 ISG20Q96AZ6 181 aaKnown RBP24.35■■□□□ 1.49
SHMT1-206ENST00000579558 ARRDC3Q96B67 414 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 HMCESQ96FZ2 354 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 HEPHQ9BQS7 1158 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 TM6SF2Q9BZW4 377 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 EBF2Q9HAK2 575 aa24.35■■□□□ 1.49
SHMT1-206ENST00000579558 ZSCAN5CA6NGD5 496 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-206ENST00000579558 RASA4BC9J798 803 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 GIPC1O14908 333 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 RASA4O43374 803 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 BUB1O43683 1085 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 LEFTY1O75610 366 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 GJB3O75712 270 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 CER1O95813 267 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 CCNHP51946 323 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-206ENST00000579558 RACK1P63244 317 aaKnown RBP24.34■■□□□ 1.49
SHMT1-206ENST00000579558 CCDC15Q0P6D6 951 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 ACAP1Q15027 740 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 PARP15Q460N3 678 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 LAYNQ6UX15 382 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 CYP4V2Q6ZWL3 525 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-206ENST00000579558 VSTM4Q8IW00 320 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 UMODL1-AS1Q8N2C9 162 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 PPP1R16AQ96I34 528 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms