RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SPEM1Q8N4L4 309 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 FBXL6Q8N531 539 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 PCDH20Q8N6Y1 951 aaKnown RBP17.4■□□□□ 0.38
NUP88-210ENST00000574867 MAML1Q92585 1016 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 FERMT1Q9BQL6 677 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 ZDHHC4Q9NPG8 344 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 HAUS2Q9NVX0 235 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 SUN2Q9UH99 717 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 EDDM13A0A1B0GTR0 161 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 MTSS1O43312 755 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 PEX11BO96011 259 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 EPHX1P07099 455 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 HOXB2P14652 356 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 PRKCHP24723 683 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 EIF3EP60228 445 aaKnown RBP17.4■□□□□ 0.38
NUP88-210ENST00000574867 AP1B1Q10567 949 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 HNRNPDQ14103 355 aaKnown RBP17.4■□□□□ 0.38
NUP88-210ENST00000574867 STARD3Q14849 445 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 DLG2Q15700 870 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 ACCSLQ4AC99 568 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 SLC45A4Q5BKX6 768 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 LEKR1Q6ZMV7 388 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 SYT13Q7L8C5 426 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 ZC3H18Q86VM9 953 aaKnown RBP17.4■□□□□ 0.38
NUP88-210ENST00000574867 FRS2Q8WU20 508 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 CCDC114Q96M63 670 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 HOMER3Q9NSC5 361 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 SEPT3Q9UH03 358 aa17.4■□□□□ 0.38
NUP88-210ENST00000574867 TTC34A8MYJ7 566 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 K7ERQ8 282 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 SGK1O00141 431 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 ADAM23O75077 832 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 RENBPP51606 427 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 LBRQ14739 615 aaKnown RBP17.39■□□□□ 0.37
NUP88-210ENST00000574867 CINPQ9BW66 212 aaPredicted RBP17.39■□□□□ 0.37
NUP88-210ENST00000574867 FBRSQ9HAH7 460 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 RNF14Q9UBS8 474 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 AMACRQ9UHK6 382 aa17.39■□□□□ 0.37
NUP88-210ENST00000574867 FCF1Q9Y324 198 aaKnown RBP17.39■□□□□ 0.37
NUP88-210ENST00000574867 TARSL2A2RTX5 802 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 H7C0C1 242 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 SMAD6O43541 496 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 PI15O43692 258 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 SYNCRIPO60506 623 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 RBP3P10745 1247 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 HSPA9P38646 679 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 ATP5OP48047 213 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 IFI35P80217 286 aaPredicted RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 GAS6Q14393 721 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 ZNF235Q14590 738 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 SIX1Q15475 284 aaPredicted RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 MARC1Q5VT66 337 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 HEATR6Q6AI08 1181 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 PKN3Q6P5Z2 889 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 MAMSTRQ6ZN01 415 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 ADAT2Q7Z6V5 191 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 SLC35B2Q8TB61 432 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 MS4A14Q96JA4 679 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 R3HDM2Q9Y2K5 976 aaKnown RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 ACTL7AQ9Y615 435 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 ATG2BQ96BY7 2078 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 WASH3PC4AMC7 463 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 ZNF185O15231 689 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 GSRP00390 522 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 HLA-EP13747 358 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 CCNB1P14635 433 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 WASP42768 502 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 MMP13P45452 471 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 RECQLP46063 649 aaPredicted RBP17.38■□□□□ 0.37
NUP88-210ENST00000574867 RHOAP61586 193 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 PLPP6Q8IY26 295 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 TEX26Q8N6G2 289 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 PSKH2Q96QS6 385 aa17.38■□□□□ 0.37
NUP88-210ENST00000574867 GOLGA6L10A0A0M3HER8 536 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 BCLAF3A2AJT9 711 aaKnown RBP17.37■□□□□ 0.37
NUP88-210ENST00000574867 NEBLO76041 1014 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 DGKEP52429 567 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 SNRPD1P62314 119 aaKnown RBP17.37■□□□□ 0.37
NUP88-210ENST00000574867 SLC10A7Q0GE19 358 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 MTAPQ13126 283 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 CAMK2GQ13555 558 aaPredicted RBP17.37■□□□□ 0.37
NUP88-210ENST00000574867 CYTH1Q15438 398 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 CRY1Q16526 586 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 CCNG2Q16589 344 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 Q6ZVU0 165 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 ZNF366Q8N895 744 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 HTR3CQ8WXA8 447 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 NKD2Q969F2 451 aaPredicted RBP17.37■□□□□ 0.37
NUP88-210ENST00000574867 GDAP1L1Q96MZ0 367 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 VAT1Q99536 393 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 FAM118BQ9BPY3 351 aa17.37■□□□□ 0.37
NUP88-210ENST00000574867 A0A1W2PQF6 199 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 CFAP69A5D8W1 941 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 KCNK1O00180 336 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 ALOX15BO15296 676 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 LIASO43766 372 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 ZNF821O75541 412 aaPredicted RBP17.36■□□□□ 0.37
NUP88-210ENST00000574867 VAV1P15498 845 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 CCR3P51677 355 aa17.36■□□□□ 0.37
NUP88-210ENST00000574867 BYSLQ13895 437 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms