RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZNF408Q9H9D4 720 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 FOXD2O60548 495 aaPredicted RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 SUPT7LO94864 414 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 MPOP05164 745 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 USP17L7P0C7H9 530 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 HARS2P49590 506 aaKnown RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 INSCQ1MX18 579 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 LIPMQ5VYY2 423 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 ARMCX2Q7L311 632 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 CLVS1Q8IUQ0 354 aaPredicted RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 ULBP1Q9BZM6 244 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 THEGQ9P2T0 379 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 EGFL7Q9UHF1 273 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 TDRKHQ9Y2W6 561 aaKnown RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 H3BNX3 289 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 GIPC1O14908 333 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 STRNO43815 780 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 GABBR2O75899 941 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 C22orf31O95567 290 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 ASLP04424 464 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TFAP2AP05549 437 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 MLNP12872 115 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 PROZP22891 400 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 PTPN3P26045 913 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 SLC12A1Q13621 1099 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 FASTKQ14296 549 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 C16orf72Q14CZ0 275 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 NT5DC4Q86YG4 428 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 FICDQ9BVA6 458 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 NRXN2Q9P2S2 1712 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 HACD1B0YJ81 288 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 H3BRB1 525 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 CCL22O00626 93 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 RNASEH2AO75792 299 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 SETSIPP0DME0 302 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 GRIA3P42263 894 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 MCCD1P59942 119 aaPredicted RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 ITPRIPL1Q6GPH6 555 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 DEFB132Q7Z7B7 95 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 ADGRG6Q86SQ4 1221 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 RIOX2Q8IUF8 465 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 DDIASQ8IXT1 998 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 OR9I1Q8NGQ6 314 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 HAUS8Q9BT25 410 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TUT1Q9H6E5 874 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 CDHR5Q9HBB8 845 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TSR3Q9UJK0 312 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 ADCYAP1R1P41586 468 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 FAM83EQ2M2I3 478 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 DRAXINQ8NBI3 349 aaPredicted RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 CXorf38Q8TB03 319 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TMIGD2Q96BF3 282 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 CNDP1Q96KN2 507 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TNIP3Q96KP6 325 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 PIGVQ9NUD9 493 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 COPG1Q9Y678 874 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 TLL2Q9Y6L7 1015 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 FAM95CA0A1B0GW59 222 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 UBDO15205 165 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 MAGEB3O15480 346 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TSPAN1O60635 241 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 YBX3P16989 372 aaKnown RBP eCLIP14.7□□□□□ -0.061e-6■■□□□ 12.5
VPS35-210ENST00000568784 PTPN9P43378 593 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 LAMC2Q13753 1193 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 ARL13BQ3SXY8 428 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 KCTD21Q4G0X4 260 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 FBXO48Q5FWF7 155 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 TWF2Q6IBS0 349 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 PLPPR4Q7Z2D5 763 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 APOBEC3FQ8IUX4 373 aaKnown RBP14.7□□□□□ -0.06
VPS35-210ENST00000568784 LILRA2Q8N149 483 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 FAM47BQ8NA70 645 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 LPGAT1Q92604 370 aa14.7□□□□□ -0.06
VPS35-210ENST00000568784 MT-ND1P03886 318 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 ACADSBP45954 432 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 INHBCP55103 352 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 CDH13P55290 713 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 PLIN5Q00G26 463 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 INCA1Q0VD86 236 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 ZFP1Q6P2D0 407 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 SETD3Q86TU7 594 aaPredicted RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 LDB1Q86U70 411 aaPredicted RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 GRIN3AQ8TCU5 1115 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 NCKIPSDQ9NZQ3 722 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 PRPF19Q9UMS4 504 aaKnown RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 COMMD10Q9Y6G5 202 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 G3V2L1 256 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 NR5A2O00482 541 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 DPYSL4O14531 572 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 CYP2C8P10632 490 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 MAGEA3P43357 314 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 XIAPP98170 497 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 HNRNPDQ14103 355 aaKnown RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 CLEC6AQ6EIG7 209 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 TTC33Q6PID6 262 aaPredicted RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 ZFRQ96KR1 1074 aaKnown RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 TRIM8Q9BZR9 551 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 TXNRD2Q9NNW7 524 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 OXSMQ9NWU1 459 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 ARHGEF38Q9NXL2 777 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms