RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PPP1R21Q6ZMI0 780 aa31.12■■■□□ 2.57
CTCF-203ENST00000566078 ZNF557Q8N988 423 aaPredicted RBP31.12■■■□□ 2.57
CTCF-203ENST00000566078 KXD1Q9BQD3 176 aa31.12■■■□□ 2.57
CTCF-203ENST00000566078 VPS51Q9UID3 782 aa31.12■■■□□ 2.57
CTCF-203ENST00000566078 SPTBN5Q9NRC6 3674 aaKnown RBP31.11■■■□□ 2.57
CTCF-203ENST00000566078 PPFIA2O75334 1257 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 ZMPSTE24O75844 475 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 NFATC1O95644 943 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 ARSAP15289 507 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 ARL4CP56559 192 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 TNK2Q07912 1038 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 SLMAPQ14BN4 828 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 HIF1AQ16665 826 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 SUSD6Q92537 303 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 ATP2A3Q93084 1043 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 LMLNQ96KR4 655 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 FCRL5Q96RD9 977 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 RBM15Q96T37 977 aaKnown RBP eCLIP31.11■■■□□ 2.57
CTCF-203ENST00000566078 MLPHQ9BV36 600 aaPredicted RBP31.11■■■□□ 2.57
CTCF-203ENST00000566078 TXLNGYQ9BZA5 131 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 EBF3Q9H4W6 596 aa31.11■■■□□ 2.57
CTCF-203ENST00000566078 CACNG3O60359 315 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 HLA-FP30511 346 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 MAXP61244 160 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 ITKQ08881 620 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 SLC12A1Q13621 1099 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 CCDC85BQ15834 202 aaPredicted RBP31.1■■■□□ 2.57
CTCF-203ENST00000566078 PLEKHG6Q3KR16 790 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 ASTLQ6HA08 431 aaPredicted RBP31.1■■■□□ 2.57
CTCF-203ENST00000566078 LINGO4Q6UY18 593 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 MFSD6LQ8IWD5 586 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 BBS5Q8N3I7 341 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 MREGQ8N565 214 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 TSEN2Q8NCE0 465 aaKnown RBP31.1■■■□□ 2.57
CTCF-203ENST00000566078 ELSPBP1Q96BH3 223 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 C2orf49Q9BVC5 232 aaPredicted RBP31.1■■■□□ 2.57
CTCF-203ENST00000566078 PLA2G2FQ9BZM2 168 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 EYSQ5T1H1 3165 aa31.1■■■□□ 2.57
CTCF-203ENST00000566078 GRM2Q14416 872 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 RFTN1Q14699 578 aaPredicted RBP31.09■■■□□ 2.57
CTCF-203ENST00000566078 CASP8Q14790 479 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 PDGFRLQ15198 375 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 PARM1Q6UWI2 310 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 CEP128Q6ZU80 1094 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 Q7L0L9 218 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 YAF2Q8IY57 180 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 PGBD5Q8N414 524 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 NAT16Q8N8M0 369 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 MCUQ8NE86 351 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 OXNAD1Q96HP4 312 aaPredicted RBP31.09■■■□□ 2.57
CTCF-203ENST00000566078 FAM83CQ9BQN1 747 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 CINPQ9BW66 212 aaPredicted RBP31.09■■■□□ 2.57
CTCF-203ENST00000566078 SEPT3Q9UH03 358 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 MYLKQ15746 1914 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 TICRRQ7Z2Z1 1910 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 PLK1P53350 603 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 FCHO2Q0JRZ9 810 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 PITRM1Q5JRX3 1037 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 FNBP1LQ5T0N5 605 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 CENPUQ71F23 418 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 HDXQ7Z353 690 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 FGF14Q92915 247 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 SERPINB12Q96P63 405 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 SAYSD1Q9NPB0 183 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 UBP1Q9NZI7 540 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 GGA2Q9UJY4 613 aa31.09■■■□□ 2.57
CTCF-203ENST00000566078 INTS6Q9UL03 887 aaKnown RBP31.09■■■□□ 2.57
CTCF-203ENST00000566078 GOLGA6CA6NDK9 693 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 GOLGA6BA6NDN3 693 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 HOXC11O43248 304 aaPredicted RBP31.08■■■□□ 2.57
CTCF-203ENST00000566078 AP2A1O95782 977 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 GOLGA6DP0CG33 693 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 PMS2P54278 862 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 CDK16Q00536 496 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 SPATA22Q8NHS9 363 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 PPP1R2P1Q96PQ5 205 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 CDX2Q99626 313 aaPredicted RBP31.08■■■□□ 2.57
CTCF-203ENST00000566078 FRMD8Q9BZ67 464 aaPredicted RBP31.08■■■□□ 2.57
CTCF-203ENST00000566078 SLC25A51Q9H1U9 297 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 HAUS2Q9NVX0 235 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 GOLGA6AQ9NYA3 693 aa31.08■■■□□ 2.57
CTCF-203ENST00000566078 ANXA9O76027 345 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 PABPC1P11940 636 aaKnown RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 SP100P23497 879 aaPredicted RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 SARNPP82979 210 aaKnown RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 MTM1Q13496 603 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 FUT11Q495W5 492 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 ZNF534Q76KX8 674 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 PDIK1LQ8N165 341 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 UBLCP1Q8WVY7 318 aaPredicted RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 ACDQ96AP0 544 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 FUT8Q9BYC5 575 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 SLC2A11Q9BYW1 496 aa31.07■■■□□ 2.56
CTCF-203ENST00000566078 POLR1EQ9GZS1 481 aaKnown RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 UBE2ZQ9H832 354 aaPredicted RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 AAR2Q9Y312 384 aaKnown RBP31.07■■■□□ 2.56
CTCF-203ENST00000566078 ERI2A8K979 691 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 MUSKO15146 869 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 CD160O95971 181 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 MT-CYBP00156 380 aaPredicted RBP31.06■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms