RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CCDC42Q96M95 316 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 NUP85Q9BW27 656 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 MAGEB5Q9BZ81 275 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 NEUROG2Q9H2A3 272 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 KDM4CQ9H3R0 1056 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 ANAPC7Q9UJX3 599 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 NEU3Q9UQ49 428 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 DOCK9Q9BZ29 2069 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 TRPM6Q9BX84 2022 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 ATXN2Q99700 1313 aaKnown RBP13.67□□□□□ -0.22
CLK3-216ENST00000564468 TP53BP1Q12888 1972 aaPredicted RBP13.67□□□□□ -0.22
CLK3-216ENST00000564468 LNP1A1A4G5 178 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PATE3B3GLJ2 98 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 AKR1B15C9JRZ8 316 aaPredicted RBP13.67□□□□□ -0.22
CLK3-216ENST00000564468 EEF2KO00418 725 aaKnown RBP13.67□□□□□ -0.22
CLK3-216ENST00000564468 KDELR3O43731 214 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 MFAP3LO75121 409 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 LRCH4O75427 683 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 VAV1P15498 845 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 GLDCP23378 1020 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 GALCP54803 685 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 SHC2P98077 582 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PARP15Q460N3 678 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 LINGO4Q6UY18 593 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PLPP6Q8IY26 295 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 UMODL1-AS1Q8N2C9 162 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 ARFGAP1Q8N6T3 406 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 NIPA2Q8N8Q9 360 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 TMIEQ8NEW7 156 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 OR2T34Q8NGX1 318 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PIP4K2CQ8TBX8 421 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 CASKIN2Q8WXE0 1202 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 SNX19Q92543 992 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PPP1R16AQ96I34 528 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 SNRNP25Q9BV90 132 aaKnown RBP13.67□□□□□ -0.22
CLK3-216ENST00000564468 ZDHHC5Q9C0B5 715 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 MIR1-1HGQ9H1L0 117 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 TMEM9BQ9NQ34 198 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 DYRK4Q9NR20 520 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 NDFIP2Q9NV92 336 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 UVRAGQ9P2Y5 699 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PPM1HQ9ULR3 514 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 PCNX2A6NKB5 2137 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 CABIN1Q9Y6J0 2220 aa13.67□□□□□ -0.22
CLK3-216ENST00000564468 SHROOM3Q8TF72 1996 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 PCDH15Q96QU1 1955 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 SMAD6O43541 496 aaKnown RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 ENGP17813 658 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 MAOBP27338 520 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 CHRNA3P32297 505 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 ACVRL1P37023 503 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 ARL4AP40617 200 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 HCAR3P49019 387 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 NDST2P52849 883 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 ADKP55263 362 aaKnown RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 ARF5P84085 180 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 HADHQ16836 314 aaKnown RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 CARD16Q5EG05 197 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 KIAA0895LQ68EN5 471 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 AADATQ8N5Z0 425 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 OR2A12Q8NGT7 310 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 OR14C36Q8NHC7 312 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 PEBP4Q96S96 227 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 ANP32EQ9BTT0 268 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 TRIM7Q9C029 511 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 C6orf106Q9H6K1 298 aaPredicted RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 ZWILCHQ9H900 591 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 CAPN10Q9HC96 672 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 OSGEPQ9NPF4 335 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 CTTNBP2NLQ9P2B4 639 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 IL36AQ9UHA7 158 aa13.66□□□□□ -0.22
CLK3-216ENST00000564468 EIF2B4Q9UI10 523 aaKnown RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.66□□□□□ -0.22
CLK3-216ENST00000564468 PLXNA2O75051 1894 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 ANKRD36A6QL64 1941 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 FAM47DPA6NHR8 397 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 ARHGAP42A6NI28 874 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 RASA4BC9J798 803 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 H3BRJ5 948 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 K7ERQ8 282 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 ARHGAP33O14559 1287 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 BCAT2O15382 392 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 RASA4O43374 803 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 BUB1O43683 1085 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 FSBPO95073 299 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 CD27P26842 260 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 PMLP29590 882 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 DRD3P35462 400 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 DNA2P51530 1060 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 CCR5P51681 352 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 SNRPD1P62314 119 aaKnown RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 TEAD4Q15561 434 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 ASTE1Q2TB18 679 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 INO80DQ53TQ3 878 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 PPP6R3Q5H9R7 873 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 N4BP2L1Q5TBK1 243 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 NCEH1Q6PIU2 408 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 RFX8Q6ZV50 586 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 LZTR1Q8N653 840 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms