RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ANXA6P08133 673 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 JMJD7P0C870 316 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 LIPCP11150 499 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 HGFP14210 728 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 CR2P20023 1033 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 RECQLP46063 649 aaPredicted RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 RABIFP47224 123 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ME1P48163 572 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 VASPP50552 380 aaPredicted RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PDX1P52945 283 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ADKP55263 362 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 CYP4F2P78329 520 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ENPEPQ07075 957 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 LRMPQ12912 555 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 SGCGQ13326 291 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 EIF3IQ13347 325 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 C1orf61Q13536 156 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 SKIDA1Q1XH10 827 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PRRT3Q5FWE3 981 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TCERG1LQ5VWI1 586 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 SYPL2Q5VXT5 272 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ESRP1Q6NXG1 681 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TMEM270Q6UE05 265 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 KYAT3Q6YP21 454 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ERN2Q76MJ5 926 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 B3GNT8Q7Z7M8 397 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 VASH2Q86V25 355 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 SLC35F3Q8IY50 421 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 SH2D3CQ8N5H7 860 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ATP11CQ8NB49 1132 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TMIEQ8NEW7 156 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 GRIN3AQ8TCU5 1115 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 BTN2A2Q8WVV5 523 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TFAP2BQ92481 460 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 CCDC47Q96A33 483 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PAGE5Q96GU1 130 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 FEM1CQ96JP0 617 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PPP1R13BQ96KQ4 1090 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 HSFY1Q96LI6 401 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 RPRD1AQ96P16 312 aaPredicted RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 GFM1Q96RP9 751 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 FEM1AQ9BSK4 669 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 FOXP3Q9BZS1 431 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 ST7Q9NRC1 585 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 GEMIN8Q9NWZ8 242 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 GULP1Q9UBP9 304 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PISDQ9UG56 409 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 KLF15Q9UIH9 416 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PADI4Q9UM07 663 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PAXBP1Q9Y5B6 917 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PCDHB11Q9Y5F2 797 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PCDHGA4Q9Y5G9 962 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 LRRK1Q38SD2 2015 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SYNJ2BP-COX16A0A087WUM0 186 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 KCNU1A8MYU2 1149 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 RAD51BO15315 384 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 NVLO15381 856 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SART1O43290 800 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 TRUB2O95900 331 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 PAEPP09466 180 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 EPB41P11171 864 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 BRD2P25440 801 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 NOS2P35228 1153 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 THOP1P52888 689 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 RPS21P63220 83 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 CENPCQ03188 943 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 EIF2B5Q13144 721 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SERINC3Q13530 473 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 IGFBP7Q16270 282 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 CNGA2Q16280 664 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 NFIL3Q16649 462 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 FOXD4L6Q3SYB3 417 aaPredicted RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 TMEM259Q4ZIN3 620 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 DCAF17Q5H9S7 520 aaPredicted RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 TTC39BQ5VTQ0 682 aaPredicted RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 FOXD4L5Q5VV16 416 aaPredicted RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 RESP18Q5W5W9 173 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 CXorf57Q6NSI4 855 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 KIAA1161Q6NSJ0 714 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 FBXL22Q6P050 247 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 FOXD4L3Q6VB84 417 aaPredicted RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 ZFAND4Q86XD8 727 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 RBFAQ8N0V3 343 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 CHST14Q8NCH0 376 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 FOXD4L4Q8WXT5 416 aaPredicted RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 ALG14Q96F25 216 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 PPP1R16AQ96I34 528 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 TRIM62Q9BVG3 475 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 BOCQ9BWV1 1114 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SRRTQ9BXP5 876 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SLC13A1Q9BZW2 595 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 MUC3BQ9H195 1237 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 COX16Q9P0S2 106 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 APOBEC3BQ9UH17 382 aaKnown RBP7.49□□□□□ -1.21
VPS4A-203ENST00000564399 ACSL6Q9UKU0 697 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 PCDHA7Q9UN72 937 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 DOLKQ9UPQ8 538 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 PCDHB4Q9Y5E5 795 aa7.49□□□□□ -1.21
VPS4A-203ENST00000564399 SDK2Q58EX2 2172 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms