RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 WDR6Q9NNW5 1121 aaKnown RBP6.34□□□□□ -1.39
CLK3-212ENST00000563418 KMT5AQ9NQR1 393 aa6.34□□□□□ -1.39
CLK3-212ENST00000563418 CPSF3Q9UKF6 684 aaKnown RBP6.34□□□□□ -1.39
CLK3-212ENST00000563418 PTPN2P17706 415 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 MGAT5Q09328 741 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 GRM2Q14416 872 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 PLA2G4EQ3MJ16 856 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 OGFOD2Q6N063 350 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 CDC73Q6P1J9 531 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 CORO6Q6QEF8 472 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 TAF8Q7Z7C8 310 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.34□□□□□ -1.4
CLK3-212ENST00000563418 SNIP1Q8TAD8 396 aaKnown RBP6.34□□□□□ -1.4
CLK3-212ENST00000563418 MBOAT7Q96N66 472 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 ZNF416Q9BWM5 594 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 PAQR5Q9NXK6 330 aaPredicted RBP6.34□□□□□ -1.4
CLK3-212ENST00000563418 SSR3Q9UNL2 185 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 PCDHA1Q9Y5I3 950 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 NEURL4Q96JN8 1562 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 TADA2AO75478 443 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 SERPINB7O75635 380 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 SFNP31947 248 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 MERTKQ12866 999 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 STARD3Q14849 445 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 PDK2Q15119 407 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 HES5Q5TA89 166 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 HAGHLQ6PII5 290 aaPredicted RBP6.34□□□□□ -1.4
CLK3-212ENST00000563418 PARP8Q8N3A8 854 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 ATG4AQ8WYN0 398 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 TWNKQ96RR1 684 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 ADAM33Q9BZ11 813 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 GANQ9H2C0 597 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 BRD9Q9H8M2 597 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 PRDM11Q9NQV5 511 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 BIN3Q9NQY0 253 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 MCUBQ9NWR8 336 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 COMMD9Q9P000 198 aa6.34□□□□□ -1.4
CLK3-212ENST00000563418 VWDEQ8N2E2 1590 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 LOC102724428A0A0B4J2F2 783 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 LSM8O95777 96 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PCCAP05165 728 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 SIK1P57059 783 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CDC42P60953 191 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CACNB1Q02641 598 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 XKR9Q5GH70 373 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 OGFRL1Q5TC84 451 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 SLC7A5P1Q8MH63 180 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 FAM71DQ8N9W8 422 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 FEZF2Q8TBJ5 459 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ANKRD49Q8WVL7 239 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ZNF512BQ96KM6 892 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PIGSQ96S52 555 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CIB1Q99828 191 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 C1QTNF1Q9BXJ1 281 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 C12orf10Q9HB07 376 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 DUSP12Q9UNI6 340 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MYMKA6NI61 221 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 PRSS44E7EML9 344 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 H3BNH8 94 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 DDX3YO15523 660 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PLOD3O60568 738 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MAP3K6O95382 1288 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ECDO95905 644 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PGAM1P18669 254 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TOB1P50616 345 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PPP2R2BQ00005 443 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ADGRD1Q6QNK2 874 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 KRT77Q7Z794 578 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CBR4Q8N4T8 237 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 OR8K5Q8NH50 307 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 NSUN6Q8TEA1 469 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 ART5Q96L15 291 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 RDH12Q96NR8 316 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SETDB2Q96T68 719 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ZNF518BQ9C0D4 1074 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 GBA3Q9H227 469 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TBC1D13Q9NVG8 400 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 GMPPBQ9Y5P6 360 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TBX3O15119 743 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ABCB7O75027 752 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CRHR1P34998 444 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 E2F2Q14209 437 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TMPRSS11AQ6ZMR5 421 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 C15orf52Q6ZUT6 534 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 SETD6Q8TBK2 473 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 HSD3B7Q9H2F3 369 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SYTL2Q9HCH5 934 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 VPS9D1Q9Y2B5 631 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 G3V2T6 193 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ALX3O95076 343 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 GDF11O95390 407 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ATF3P18847 181 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 LRRC74AQ0VAA2 488 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 EARS2Q5JPH6 523 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 LDLRAP1Q5SW96 308 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 BAP1Q92560 729 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 HYLS1Q96M11 299 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 BBS4Q96RK4 519 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CDK5RAP1Q96SZ6 601 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PFDN5Q99471 154 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms