RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 HLA-DQA2P01906 255 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 TBC1D3HP0C7X1 549 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 TSHRP16473 764 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 HOXB9P17482 250 aaPredicted RBP2.87□□□□□ -1.95
SPG11-222ENST00000560435 TIMP3P35625 211 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 CLCNKBP51801 687 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 ZNF132P52740 706 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 FAM3BP58499 235 aaPredicted RBP2.87□□□□□ -1.95
SPG11-222ENST00000560435 ADORA2A-AS1P86434 159 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 BSPRYQ5W0U4 402 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 TBC1D3GQ6DHY5 549 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 TBC1D3CQ6IPX1 549 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 SERPINA11Q86U17 422 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 DGKHQ86XP1 1220 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 EPHX4Q8IUS5 362 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 TBC1D3Q8IZP1 549 aaPredicted RBP2.87□□□□□ -1.95
SPG11-222ENST00000560435 CCDC33Q8N5R6 958 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 ENDOVQ8N8Q3 282 aaKnown RBP2.87□□□□□ -1.95
SPG11-222ENST00000560435 CLEC4CQ8WTT0 213 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 HDAC7Q8WUI4 952 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 TMEM18Q96B42 140 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 FRG2BQ96QU4 278 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 APOL5Q9BWW9 433 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.87□□□□□ -1.95
SPG11-222ENST00000560435 ZFP57Q9NU63 452 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 DDX43Q9NXZ2 648 aaKnown RBP2.87□□□□□ -1.95
SPG11-222ENST00000560435 CDH22Q9UJ99 828 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 NFU1Q9UMS0 254 aa2.87□□□□□ -1.95
SPG11-222ENST00000560435 SYT5O00445 386 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 PCDH17O14917 1159 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 NTSR2O95665 410 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 PMS2P2O95744 297 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 CH25HO95992 272 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 IGHV4-30-4P0DP06 118 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 FGF5P12034 268 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 FMO4P31512 558 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 NR0B1P51843 470 aaKnown RBP2.86□□□□□ -1.95
SPG11-222ENST00000560435 OAZ1P54368 228 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 DHX34Q14147 1143 aaKnown RBP2.86□□□□□ -1.95
SPG11-222ENST00000560435 GBX1Q14549 363 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 GRM3Q14832 879 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 GRM4Q14833 912 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 CALCRLQ16602 461 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 TMEM30BQ3MIR4 351 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 SYTL3Q4VX76 610 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 C19orf48Q6RUI8 117 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 NEK10Q6ZWH5 1172 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 RBFAQ8N0V3 343 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 LYG1Q8N1E2 194 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 TAS1R2Q8TE23 839 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 GPATCH3Q96I76 525 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 PYGO2Q9BRQ0 406 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 BARHL1Q9BZE3 327 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 CLK4Q9HAZ1 481 aaKnown RBP2.86□□□□□ -1.95
SPG11-222ENST00000560435 SLC52A1Q9NWF4 448 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 MAN2B2Q9Y2E5 1009 aa2.86□□□□□ -1.95
SPG11-222ENST00000560435 MST1RQ04912 1400 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 TMEM247A6NEH6 219 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 HNRNPCL2B2RXH8 293 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 RPP40O75818 363 aaKnown RBP2.85□□□□□ -1.95
SPG11-222ENST00000560435 GLP2RO95838 553 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 ANXA6P08133 673 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 KCNA5P22460 613 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 RFC1P35251 1148 aaPredicted RBP2.85□□□□□ -1.95
SPG11-222ENST00000560435 KRTAP10-8P60410 259 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 MAPK1IP1LQ8NDC0 245 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 FAR1Q8WVX9 515 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 ZNF501Q96CX3 271 aaPredicted RBP2.85□□□□□ -1.95
SPG11-222ENST00000560435 NPAS1Q99742 590 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 DCTN5Q9BTE1 182 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 CCDC134Q9H6E4 229 aa2.85□□□□□ -1.95
SPG11-222ENST00000560435 FRMPD2Q68DX3 1309 aaPredicted RBP2.85□□□□□ -1.95
SPG11-222ENST00000560435 FAM234BA2RU67 622 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 KIF1CO43896 1103 aaKnown RBP2.84□□□□□ -1.95
SPG11-222ENST00000560435 SCGB1D2O95969 90 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 ATP1A1P05023 1023 aaKnown RBP2.84□□□□□ -1.95
SPG11-222ENST00000560435 CKMT1AP12532 417 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 TYK2P29597 1187 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 RPL3P39023 403 aaKnown RBP2.84□□□□□ -1.95
SPG11-222ENST00000560435 NLRP5P59047 1200 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 ZBTB17Q13105 803 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 ZACNQ401N2 412 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 LCE3EQ5T5B0 92 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 CYB5RLQ6IPT4 315 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 SLC26A9Q7LBE3 791 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 CIARTQ8N365 385 aaPredicted RBP2.84□□□□□ -1.95
SPG11-222ENST00000560435 ZNF441Q8N8Z8 693 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 KBTBD3Q8NAB2 608 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 GRAPLQ8TC17 118 aaPredicted RBP2.84□□□□□ -1.95
SPG11-222ENST00000560435 WDR60Q8WVS4 1066 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 MTBPQ96DY7 904 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 OR1F2PQ96R84 312 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 LRFN1Q9P244 771 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 POU2F3Q9UKI9 436 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 OSGIN2Q9Y236 505 aa2.84□□□□□ -1.95
SPG11-222ENST00000560435 A0A0A0MQY5 61 aa2.83□□□□□ -1.96
SPG11-222ENST00000560435 MBD3L5A6NJ08 208 aaPredicted RBP2.83□□□□□ -1.96
SPG11-222ENST00000560435 APOL1O14791 398 aa2.83□□□□□ -1.96
SPG11-222ENST00000560435 TIMM23O14925 209 aa2.83□□□□□ -1.96
SPG11-222ENST00000560435 KPNA5O15131 536 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms