RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SATB1Q01826 763 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 RAD51Q06609 339 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 ZNF211Q13398 564 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 CAMK2GQ13555 558 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 GAS6Q14393 721 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 LBRQ14739 615 aaKnown RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 ZNF776Q68DI1 518 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 ANO7Q6IWH7 933 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 PKN3Q6P5Z2 889 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 Q6ZVU0 165 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 CDKL3Q8IVW4 592 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 CCDC13Q8IYE1 715 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 PGBD3Q8N328 593 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 RYBPQ8N488 228 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 CCNYQ8ND76 341 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 OR2AP1Q8NGE2 309 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 OR2T3Q8NH03 318 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 OR8D1Q8WZ84 308 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 MYO19Q96H55 970 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 LRIG1Q96JA1 1093 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 PBKQ96KB5 322 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 OLFM3Q96PB7 478 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 HHIPQ96QV1 700 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 NAP1L3Q99457 506 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 NAPGQ99747 312 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 HEMGNQ9BXL5 484 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 TLR10Q9BXR5 811 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 FRMD8P1Q9BZ68 369 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 AMACRQ9UHK6 382 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 SLCO3A1Q9UIG8 710 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 HCN2Q9UL51 889 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 SCML1Q9UN30 329 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 FCF1Q9Y324 198 aaKnown RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 MFHAS1Q9Y4C4 1052 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 ZNF318Q5VUA4 2279 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 CCDC163A0A0D9SF12 145 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 CTAGE9A4FU28 777 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 HACD1B0YJ81 288 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 WASH3PC4AMC7 463 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 J3KR12 359 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 ENC1O14682 589 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 BNIP3LO60238 219 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 MAFKO60675 156 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 STK10O94804 968 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 MT-CO1P00395 513 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 DNTTP04053 509 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 PRNPP04156 253 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 ACADMP11310 421 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 TCP1P17987 556 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 HOXA6P31267 233 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 MMP13P45452 471 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 ZBTB16Q05516 673 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 PPIDQ08752 370 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 CCDC15Q0P6D6 951 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 AP1B1Q10567 949 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 XRCC4Q13426 336 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 BYSLQ13895 437 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 HNRNPDQ14103 355 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 GRM3Q14832 879 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 LLGL1Q15334 1064 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 ZNF528Q3MIS6 628 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 CARD16Q5EG05 197 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 RALGPS1Q5JS13 557 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 MARC1Q5VT66 337 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 DCAF12L1Q5VU92 463 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 FAM46CQ5VWP2 391 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 ARHGAP36Q6ZRI8 547 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 PLPP6Q8IY26 295 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 ZNF366Q8N895 744 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 FRS2Q8WU20 508 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 TFB1MQ8WVM0 346 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 HMGB4Q8WW32 186 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 PRCCQ92733 491 aaPredicted RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 PPP1R16AQ96I34 528 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 SPACA7Q96KW9 195 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 TSGA13Q96PP4 275 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 QKIQ96PU8 341 aaKnown RBP eCLIP10.25□□□□□ -0.771e-15■■■■■ 29.2
USP3-216ENST00000559873 POLR1EQ9GZS1 481 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 IRF2BPLQ9H1B7 796 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 PRSS16Q9NQE7 514 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 EBF1Q9UH73 591 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 TRIOO75962 3097 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 MYO18AQ92614 2054 aaKnown RBP10.25□□□□□ -0.77
USP3-216ENST00000559873 CACNA1HO95180 2353 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 KMT2EQ8IZD2 1858 aa10.25□□□□□ -0.77
USP3-216ENST00000559873 CKAP5Q14008 2032 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 A0A1W2PQF6 199 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 CFAP69A5D8W1 941 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 H7C0C1 242 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 K7ERQ8 282 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 KIF2AO00139 706 aaPredicted RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 CES2O00748 559 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 MATN3O15232 486 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 SMAD6O43541 496 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 CEP104O60308 925 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ZNF217O75362 1048 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 MAP3K6O95382 1288 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ADH1BP00325 375 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 FGGP02679 453 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 TUBB4AP04350 444 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms