RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SPATA2LQ8IUW3 424 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 SCUBE1Q8IWY4 988 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ARHGAP18Q8N392 663 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 C3orf58Q8NDZ4 430 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 TTC8Q8TAM2 541 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 URGCPQ8TCY9 931 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 RSPH1Q8WYR4 309 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 EDEM1Q92611 657 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 LPPQ93052 612 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 PRR11Q96HE9 360 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 NAF1Q96HR8 494 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 VPS39Q96JC1 886 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 SUSD3Q96L08 255 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 FAM161BQ96MY7 647 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF570Q96NI8 536 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 FCRL3Q96P31 734 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 PKMYT1Q99640 499 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 GPR22Q99680 433 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 TBL1YQ9BQ87 522 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 RTP3Q9BQQ7 232 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 MLPHQ9BV36 600 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 RHOJQ9H4E5 214 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CXorf56Q9H5V9 222 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 GPAMQ9HCL2 828 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ANLNQ9NQW6 1124 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ENTPD7Q9NQZ7 604 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 TBC1D13Q9NVG8 400 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 PIH1D1Q9NWS0 290 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 MIOSQ9NXC5 875 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 TMEM216Q9P0N5 145 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ARMCX1Q9P291 453 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 SLC17A6Q9P2U8 582 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 STX18Q9P2W9 335 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 NKX1-2Q9UD57 310 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 TLK1Q9UKI8 766 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 TIMM13Q9Y5L4 95 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 MYO18AQ92614 2054 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 DOCK3Q8IZD9 2030 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 MYADML2A6NDP7 307 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MEIS3P2A8K0S8 358 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SLCO1B7G3V0H7 640 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MATN3O15232 486 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SLC22A2O15244 555 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 INPPL1O15357 1258 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 NVLO15381 856 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TRIM13O60858 407 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FKBP6O75344 327 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ENTPD5O75356 428 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 JCHAINP01591 159 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SLC2A3P11169 496 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 GM2AP17900 193 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ATP6V1C1P21283 382 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PTDSS1P48651 473 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 COPAP53621 1224 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FCGRTP55899 365 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 EIF4EBP2Q13542 120 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 DSC3Q14574 896 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 NAA25Q14CX7 972 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 HSP90AA5PQ58FG0 334 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FAM182AQ5T1J6 154 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ACBD5Q5T8D3 534 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MANEALQ5VSG8 457 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 METTL21CQ5VZV1 264 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CES4AQ5XG92 561 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 RFWD3Q6PCD5 774 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CXCL17Q6UXB2 119 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TREML1Q86YW5 311 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 APLFQ8IW19 511 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CNTN4Q8IWV2 1026 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PLPP6Q8IY26 295 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 RBM15BQ8NDT2 890 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 OR6Y1Q8NGX8 325 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 DNAJC9Q8WXX5 260 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 JADE3Q92613 823 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 DPF3Q92784 378 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FATE1Q969F0 183 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SERPINB11Q96P15 392 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SORT1Q99523 831 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 IL12RB2Q99665 862 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FAM167BQ9BTA0 163 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PRKD2Q9BZL6 878 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 UBE2OQ9C0C9 1292 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 C20orf27Q9GZN8 174 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CDH19Q9H159 772 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 NMRAL1Q9HBL8 299 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 GLOD4Q9HC38 313 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 IARS2Q9NSE4 1012 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MRGBPQ9NV56 204 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 EGFL7Q9UHF1 273 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PADI3Q9ULW8 664 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 NLRC5Q86WI3 1866 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MYO16Q9Y6X6 1858 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SHROOM3Q8TF72 1996 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 GOLGA8QA0A0J9YX86 632 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 GOLGA8OA6NCC3 632 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 WASH4PA8MWX3 477 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PRR5-ARHGAP8B1AHC4 643 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 GOLGA8NF8WBI6 632 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 H0Y3Z8 333 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 I6L893 689 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms