RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 FSTL5Q8N475 847 aaPredicted RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 CCNYL1Q8N7R7 359 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 TMEM209Q96SK2 561 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 STN1Q9H668 368 aaKnown RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 GNEQ9Y223 722 aaKnown RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 PLXNB2O15031 1838 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 HHLA1C9JL84 531 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 F8W810 466 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 MATN2O00339 956 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 TCN1P20061 433 aaPredicted RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 GLDCP23378 1020 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 BDNFP23560 247 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 PIK3R1P27986 724 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 DPP6P42658 865 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 THOP1P52888 689 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 DBN1Q16643 649 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 LSMEM2Q8N112 164 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 NXNL1Q96CM4 212 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 GCNAQ96QF7 691 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 ILKAPQ9H0C8 392 aaPredicted RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 ZCWPW1Q9H0M4 648 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 ARHGAP26Q9UNA1 814 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 MTF2Q9Y483 593 aaPredicted RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 C9IYK1 514 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 TXNDC9O14530 226 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 MSI1O43347 362 aaKnown RBP13.09□□□□□ -0.31
LDLR-207ENST00000558013 PGK1P00558 417 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 MTTPP55157 894 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 GJA9P57773 515 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 GALNT2Q10471 571 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 GRAMD1BQ3KR37 738 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 IL31Q6EBC2 164 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 FBXL19Q6PCT2 694 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 RCN3Q96D15 328 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 CDRT15Q96T59 188 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 TMLHEQ9NVH6 421 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 CPA4Q9UI42 421 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 TSC2P49815 1807 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 DLX3O60479 287 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 PMPCBO75439 489 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 ATP5BP06576 529 aaKnown RBP13.09□□□□□ -0.31
LDLR-207ENST00000558013 ETS2P15036 469 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 XRCC1P18887 633 aaPredicted RBP13.09□□□□□ -0.31
LDLR-207ENST00000558013 ARNTP27540 789 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 GRIA2P42262 883 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 CDK7P50613 346 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 MS4A2Q01362 244 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 CNGA3Q16281 694 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 ZNF789Q5FWF6 425 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 TMC7Q7Z402 723 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 ZNF467Q7Z7K2 595 aaPredicted RBP13.09□□□□□ -0.31
LDLR-207ENST00000558013 DPF3Q92784 378 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 HDAC11Q96DB2 347 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 XPR1Q9UBH6 696 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 TLK1Q9UKI8 766 aa13.09□□□□□ -0.31
LDLR-207ENST00000558013 XPOTO43592 962 aaKnown RBP13.08□□□□□ -0.31
LDLR-207ENST00000558013 HNRNPLP14866 589 aaKnown RBP eCLIP13.08□□□□□ -0.31
LDLR-207ENST00000558013 PSEN2P49810 448 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 SCNN1GP51170 649 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 MRPS22P82650 360 aaKnown RBP13.08□□□□□ -0.31
LDLR-207ENST00000558013 PLEKHH3Q7Z736 793 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 KBTBD6Q86V97 674 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 TNFRSF12AQ9NP84 129 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 SFMBT1Q9UHJ3 866 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 ADAM28Q9UKQ2 775 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 INPP5FQ9Y2H2 1132 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 TLL2Q9Y6L7 1015 aa13.08□□□□□ -0.31
LDLR-207ENST00000558013 TTC24A2A3L6 582 aaPredicted RBP13.08□□□□□ -0.32
LDLR-207ENST00000558013 MPOP05164 745 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 RPL14P50914 215 aaKnown RBP13.08□□□□□ -0.32
LDLR-207ENST00000558013 PAPOLAP51003 745 aaKnown RBP13.08□□□□□ -0.32
LDLR-207ENST00000558013 SCAPQ12770 1279 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 GK3PQ14409 553 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 TIGD5Q53EQ6 642 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 TSTD2Q5T7W7 516 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 AAGABQ6PD74 315 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 SLC30A9Q6PML9 568 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 RNF135Q8IUD6 432 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 DSELQ8IZU8 1212 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 NTAN1Q96AB6 310 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 NDNQ99608 321 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 GPR22Q99680 433 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 RTP3Q9BQQ7 232 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 KLHL4Q9C0H6 718 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 IL22Q9GZX6 179 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 CCL22O00626 93 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 HDAC3O15379 428 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 TIMM44O43615 452 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 FESP07332 822 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 ENO3P13929 434 aaPredicted RBP13.08□□□□□ -0.32
LDLR-207ENST00000558013 VCLP18206 1134 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 HDCP19113 662 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 LRPAP1P30533 357 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 BRCC3P46736 316 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 SEL1L3Q68CR1 1132 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 PDZD4Q76G19 769 aaPredicted RBP13.08□□□□□ -0.32
LDLR-207ENST00000558013 PPP2R3CQ969Q6 453 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 SLC9A7Q96T83 725 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 CYP4F12Q9HCS2 524 aa13.08□□□□□ -0.32
LDLR-207ENST00000558013 SPATS2LQ9NUQ6 558 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms