RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 AURKCQ9UQB9 309 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 ATP6V1G1O75348 118 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 SBK3P0C264 359 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 CCR3P51677 355 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 DPYSL2Q16555 572 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 PIGGQ5H8A4 983 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 KRT80Q6KB66 452 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 ADGRG6Q86SQ4 1221 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 LDB1Q86U70 411 aaPredicted RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 FSTL5Q8N475 847 aaPredicted RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 NPWQ8N729 165 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.54□□□□□ -0.4
LDLR-205ENST00000557933 SLC35F5Q8WV83 523 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 NXNL1Q96CM4 212 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 EIF2AQ9BY44 585 aaKnown RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 MKS1Q9NXB0 559 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 EBF1Q9UH73 591 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 TIMM13Q9Y5L4 95 aaPredicted RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 MCM3APO60318 1980 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 SMIM31A0A1B0GVY4 71 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 ARHGEF37A1IGU5 675 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 RGSL1A5PLK6 1076 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 USP2O75604 605 aaPredicted RBP12.53□□□□□ -0.4
LDLR-205ENST00000557933 TMCC1O94876 653 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 TXNP10599 105 aaKnown RBP12.53□□□□□ -0.4
LDLR-205ENST00000557933 PSMC3P17980 439 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 CHRM3P20309 590 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 CES1P23141 567 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 YWHAQP27348 245 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 ENTPD1P49961 510 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 ZBTB17Q13105 803 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 CLEC6AQ6EIG7 209 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 CEP97Q8IW35 865 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 OFCC1Q8IZS5 231 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 SLC2A6Q9UGQ3 507 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 PDE4DIPQ5VU43 2346 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 MATN2O00339 956 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 TRMUO75648 421 aaKnown RBP12.53□□□□□ -0.4
LDLR-205ENST00000557933 THRAP10827 490 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 NFKB1P19838 968 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 ME2P23368 584 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 GLDCP23378 1020 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 MAGEA10P43363 369 aaPredicted RBP12.53□□□□□ -0.4
LDLR-205ENST00000557933 RPL14P50914 215 aaKnown RBP12.53□□□□□ -0.4
LDLR-205ENST00000557933 C16orf72Q14CZ0 275 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 TIFABQ6ZNK6 161 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 ANKRD23Q86SG2 305 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 IFNEQ86WN2 208 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 MARVELD2Q8N4S9 558 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 FAM47BQ8NA70 645 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 TSPAN14Q8NG11 270 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 GAB3Q8WWW8 586 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 TLK1Q9UKI8 766 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 CDC14AQ9UNH5 594 aa12.53□□□□□ -0.4
LDLR-205ENST00000557933 ZCWPW2A0A1B0GU75 182 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 HDAC3O15379 428 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 ALDH1A2O94788 518 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 TNFAIP8O95379 198 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 JCHAINP01591 159 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 CDH2P19022 906 aaPredicted RBP12.52□□□□□ -0.4
LDLR-205ENST00000557933 KCNA5P22460 613 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 SPRP35270 261 aaPredicted RBP12.52□□□□□ -0.4
LDLR-205ENST00000557933 FKBP1BP68106 108 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 PLOD1Q02809 727 aaPredicted RBP12.52□□□□□ -0.4
LDLR-205ENST00000557933 ENPEPQ07075 957 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 LAMC2Q13753 1193 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 MGAT5BQ3V5L5 792 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 LRRC8EQ6NSJ5 796 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 ARHGAP36Q6ZRI8 547 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 LPCAT2Q7L5N7 544 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 NUP93Q8N1F7 819 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 SLC7A14Q8TBB6 771 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 RBM38Q9H0Z9 239 aaKnown RBP12.52□□□□□ -0.4
LDLR-205ENST00000557933 PIGVQ9NUD9 493 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 PTTG2Q9NZH5 202 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 SHROOM3Q8TF72 1996 aa12.52□□□□□ -0.4
LDLR-205ENST00000557933 TRPM7Q96QT4 1865 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 CASQ2O14958 399 aaPredicted RBP12.52□□□□□ -0.41
LDLR-205ENST00000557933 MDM4O15151 490 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 SPTLC1O15269 473 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 GABRB3P28472 473 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 GARSP41250 739 aaKnown RBP12.52□□□□□ -0.41
LDLR-205ENST00000557933 SERPINB8P50452 374 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 LIMK2P53671 638 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 OAZ1P54368 228 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 RBP5P82980 135 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 AGKQ53H12 422 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 KLHL35Q6PF15 583 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 ZNF410Q86VK4 478 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 ZNF786Q8N393 782 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 RHOBTB2Q9BYZ6 727 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 NXF3Q9H4D5 531 aaKnown RBP12.52□□□□□ -0.41
LDLR-205ENST00000557933 TXNRD2Q9NNW7 524 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 ADAMTS5Q9UNA0 930 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 FAF1Q9UNN5 650 aaPredicted RBP12.52□□□□□ -0.41
LDLR-205ENST00000557933 SORCS3Q9UPU3 1222 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 CDYLQ9Y232 598 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 TNFSF13BQ9Y275 285 aa12.52□□□□□ -0.41
LDLR-205ENST00000557933 TTC24A2A3L6 582 aaPredicted RBP12.51□□□□□ -0.41
LDLR-205ENST00000557933 PRORSD1PA6NEY8 169 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms