RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RNF103O00237 685 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 MATN3O15232 486 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 EPHX1P07099 455 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 TCP1P17987 556 aaKnown RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 RGRP47804 291 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 CLCN6P51797 869 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 NRLP54845 237 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 EIF3EP60228 445 aaKnown RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 ST8SIA6P61647 398 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 AP1B1Q10567 949 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 ZBTB17Q13105 803 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 LBRQ14739 615 aaKnown RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 KCTD19Q17RG1 926 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 HNRNPA1L2Q32P51 320 aaKnown RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 ATXN7L2Q5T6C5 722 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 C9orf64Q5T6V5 341 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 C22orf39Q6P5X5 142 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 Q6ZVU0 165 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 CREG2Q8IUH2 290 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 LRRC49Q8IUZ0 686 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 CCDC13Q8IYE1 715 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 KDM1BQ8NB78 822 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 SLC35B2Q8TB61 432 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 MAML1Q92585 1016 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 CAPZA3Q96KX2 299 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 CEP41Q9BYV8 373 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 PRSS16Q9NQE7 514 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 LHX3Q9UBR4 397 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 TTC7AQ9ULT0 858 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-227ENST00000557269 MMP17Q9ULZ9 603 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 SAR1BQ9Y6B6 198 aa13.05□□□□□ -0.32
SHMT2-227ENST00000557269 CXorf51AA0A1B0GTR3 108 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 TTC24A2A3L6 582 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 ZSCAN5CA6NGD5 496 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 H7C0C1 242 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 PDE2AO00408 941 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 CES2O00748 559 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 PPP1R12AO14974 1030 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 NPC1O15118 1278 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 BNIP3LO60238 219 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SIN3BO75182 1162 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 RBP3P10745 1247 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 CCNB1P14635 433 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 HOXB2P14652 356 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 RBL1P28749 1068 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 GKP32189 559 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 NNMTP40261 264 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 ATP5OP48047 213 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 GEMIN4P57678 1058 aaKnown RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SATB1Q01826 763 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 XRCC4Q13426 336 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SNX1Q13596 522 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 CRY1Q16526 586 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 HSF5Q4G112 596 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 INO80DQ53TQ3 878 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SLC45A4Q5BKX6 768 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 EOGTQ5NDL2 527 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 TMCO4Q5TGY1 634 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 BZW1Q7L1Q6 419 aaKnown RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SYT13Q7L8C5 426 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SPEM1Q8N4L4 309 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 TEX26Q8N6G2 289 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 CNTD1Q8N815 330 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 PRELID2Q8N945 189 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 TSEN2Q8NCE0 465 aaKnown RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 CHST14Q8NCH0 376 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 OR2A12Q8NGT7 310 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 ACTRT1Q8TDG2 376 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 TFB1MQ8WVM0 346 aaKnown RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 FATE1Q969F0 183 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 EXOC2Q96KP1 924 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 NSMCE3Q96MG7 304 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 ZNF599Q96NL3 588 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 QKIQ96PU8 341 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 FAM129BQ96TA1 746 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 AP1M1Q9BXS5 423 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 TM6SF2Q9BZW4 377 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 SLC6A17Q9H1V8 727 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 DNPEPQ9ULA0 475 aa13.04□□□□□ -0.32
SHMT2-227ENST00000557269 MYO18AQ92614 2054 aaKnown RBP13.04□□□□□ -0.32
SHMT2-227ENST00000557269 EDDM13A0A1B0GTR0 161 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 PGRMC1O00264 195 aaKnown RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 INSIG1O15503 277 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 LIASO43766 372 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 JCHAINP01591 159 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 AVPR2P30518 371 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 MMP13P45452 471 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 COPAP53621 1224 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 MAXP61244 160 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 IFI35P80217 286 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 WASHC5Q12768 1159 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 CAMK2GQ13555 558 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 HNRNPDQ14103 355 aaKnown RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 IHHQ14623 411 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 CARD16Q5EG05 197 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 MARC1Q5VT66 337 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 SDE2Q6IQ49 451 aa13.03□□□□□ -0.32
SHMT2-227ENST00000557269 TIGD7Q6NT04 549 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 DARS2Q6PI48 645 aaKnown RBP13.03□□□□□ -0.32
SHMT2-227ENST00000557269 DPY19L3Q6ZPD9 716 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms