RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 SETD4Q9NVD3 440 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 LMCD1Q9NZU5 365 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 TMCO1Q9UM00 188 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 SHROOM3Q8TF72 1996 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 PENKP01210 267 aaPredicted RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 FAM200BP0CF97 657 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 CYP2B6P20813 491 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 GABRB3P28472 473 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 SLC5A2P31639 672 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 POU5F1BQ06416 359 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 NSUN2Q08J23 767 aaKnown RBP eCLIP11.57□□□□□ -0.56
SRP54-213ENST00000556994 PRKAA1Q13131 559 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 CTBP1Q13363 440 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 DPYSQ14117 519 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 PTK2BQ14289 1009 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 ANO4Q32M45 955 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 DALRD3Q5D0E6 543 aaKnown RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 C9orf57Q5W0N0 161 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 ZNF410Q86VK4 478 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 LCA5Q86VQ0 697 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 UNC93AQ86WB7 457 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 APOBEC3FQ8IUX4 373 aaKnown RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 DENND6AQ8IWF6 608 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 CPSF7Q8N684 471 aaKnown RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 LINC01465Q8N7H1 131 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 CATSPER1Q8NEC5 780 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 TMIGD2Q96BF3 282 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 NXNL1Q96CM4 212 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 ZFRQ96KR1 1074 aaKnown RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 COQ10BQ9H8M1 238 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 LIN28AQ9H9Z2 209 aaKnown RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 RCOR3Q9P2K3 495 aaPredicted RBP11.57□□□□□ -0.56
SRP54-213ENST00000556994 XPR1Q9UBH6 696 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 DMTF1Q9Y222 760 aa11.57□□□□□ -0.56
SRP54-213ENST00000556994 STRNO43815 780 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 H2AFYO75367 372 aaKnown RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 AHSGP02765 367 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 SLC35E2BP0CK96 405 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 CDK4P11802 303 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 HNRNPLP14866 589 aaKnown RBP eCLIP11.56□□□□□ -0.568e-11■■□□□ 12.2
SRP54-213ENST00000556994 ZNF26P17031 533 aaPredicted RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 SH3BGRP55822 239 aaPredicted RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 RALGDSQ12967 914 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 TTLL4Q14679 1199 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 KCTD2Q14681 263 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 KYAT1Q16773 422 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 MGAT5BQ3V5L5 792 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 SH2D4BQ5SQS7 431 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 ZC3HC1Q86WB0 502 aaKnown RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 NT5DC4Q86YG4 428 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 IFNLR1Q8IU57 520 aaPredicted RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 CEP97Q8IW35 865 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 CENPLQ8N0S6 344 aaPredicted RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 BEST2Q8NFU1 509 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 CEP70Q8NHQ1 597 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 SLC7A14Q8TBB6 771 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 USP33Q8TEY7 942 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 LRTOMTQ8WZ04 291 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 TSNARE1Q96NA8 513 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 MPHOSPH6Q99547 160 aaKnown RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 FTHL17Q9BXU8 183 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 SNX25Q9H3E2 840 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 NXF3Q9H4D5 531 aaKnown RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 RHBDL2Q9NX52 303 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 VPS28Q9UK41 221 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 RNF11Q9Y3C5 154 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 MRPL42Q9Y6G3 142 aaKnown RBP11.56□□□□□ -0.56
SRP54-213ENST00000556994 A0A0G2JMZ2 1700 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 LRRC37A2A6NM11 1700 aa11.56□□□□□ -0.56
SRP54-213ENST00000556994 NEMP2A6NFY4 417 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 PDLIM1O00151 329 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 IRF6O14896 467 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 XPO1O14980 1071 aaKnown RBP11.55□□□□□ -0.56
SRP54-213ENST00000556994 CABYRO75952 493 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 DDHD2O94830 711 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 PSMC3P17980 439 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 HOXA11P31270 313 aaPredicted RBP11.55□□□□□ -0.56
SRP54-213ENST00000556994 ACADSBP45954 432 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 SCNN1BP51168 640 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 HPCAP84074 193 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 MPP1Q00013 466 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 ARHGAP1Q07960 439 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 APOFQ13790 326 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 ZBTB6Q15916 424 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 DGKDQ16760 1214 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 TMEM259Q4ZIN3 620 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 FBXO47Q5MNV8 452 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 NOL9Q5SY16 702 aaKnown RBP11.55□□□□□ -0.56
SRP54-213ENST00000556994 KCTD11Q693B1 232 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 ZNF280DQ6N043 979 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 CYP2R1Q6VVX0 501 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 OTOP3Q7RTS5 596 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 CRYBG2Q8N1P7 616 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 MYO1HQ8N1T3 1032 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 SNX27Q96L92 541 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 HSFY1Q96LI6 401 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 GPR22Q99680 433 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 MCMBPQ9BTE3 642 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 IL22Q9GZX6 179 aa11.55□□□□□ -0.56
SRP54-213ENST00000556994 CDHR5Q9HBB8 845 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms