RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ARHGAP42A6NI28 874 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SOWAHDA6NJG2 315 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 RNASEH2AO75792 299 aaKnown RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 IPO7O95373 1038 aaKnown RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SEMA4FO95754 770 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 PRNPP04156 253 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 AMPD1P23109 780 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 ACSL1P33121 698 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 HOXD12P35452 270 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 MPLP40238 635 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SLC1A1P43005 524 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 NOP2P46087 812 aaKnown RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 PSMD8P48556 350 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 DNA2P51530 1060 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 ARSEP51690 589 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 CDH6P55285 790 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SNRPD1P62314 119 aaKnown RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 CCDC15Q0P6D6 951 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 ATP13A4Q4VNC1 1196 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 WDR45BQ5MNZ6 344 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 AFMIDQ63HM1 303 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 C22orf39Q6P5X5 142 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 TMCO3Q6UWJ1 677 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 ARMCX6Q7L4S7 300 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 CYP2U1Q7Z449 544 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SYT12Q8IV01 421 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SLC41A1Q8IVJ1 513 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 MAP7D3Q8IWC1 876 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SPC24Q8NBT2 197 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 KCTD6Q8NC69 237 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 PIP4K2CQ8TBX8 421 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 TSC1Q92574 1164 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 PIGKQ92643 395 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 CALR3Q96L12 384 aaKnown RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 CSPG4P5Q96PW8 444 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 TNKS2Q9H2K2 1166 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 PCDH18Q9HCL0 1135 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 PARD6AQ9NPB6 346 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 IL36AQ9UHA7 158 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 SARDHQ9UL12 918 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 FCF1Q9Y324 198 aaKnown RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 ACTL7AQ9Y615 435 aa10.89□□□□□ -0.67
LINC00239-201ENST00000556973 TMEM110-MUSTN1A8MSY1 372 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 KHNYNO15037 678 aaKnown RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 SLC7A4O43246 635 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 POP4O95707 220 aaKnown RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 ITPKAP23677 461 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 IL4RP24394 825 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 PAPOLAP51003 745 aaKnown RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 TAS2R40P59535 323 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 IL10RBQ08334 325 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 CCDC6Q16204 474 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 ARSIQ5FYB1 569 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 ZFYVE27Q5T4F4 411 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 DCAF12L1Q5VU92 463 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 PEAR1Q5VY43 1037 aaPredicted RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 DPY19L3Q6ZPD9 716 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 PRR23CQ6ZRP0 262 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 RABEPKQ7Z6M1 372 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 ARHGAP12Q8IWW6 846 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 RGL4Q8IZJ4 473 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 AADATQ8N5Z0 425 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 C12orf50Q8NA57 414 aaPredicted RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 OR2AP1Q8NGE2 309 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 CEP76Q8TAP6 659 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 DNASE2BQ8WZ79 361 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 CELF6Q96J87 481 aaKnown RBP10.88□□□□□ -0.67
LINC00239-201ENST00000556973 LRIG1Q96JA1 1093 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 HSPA12BQ96MM6 686 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 HEPHQ9BQS7 1158 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 CALN1Q9BXU9 219 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 KDM4CQ9H3R0 1056 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 TMEM74BQ9NUR3 256 aa10.88□□□□□ -0.67
LINC00239-201ENST00000556973 LRRC72A6NJI9 287 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 MEI4A8MW99 385 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 PRR5-ARHGAP8B1AHC4 643 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 J3KR12 359 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 DFFAO00273 331 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 PRAMEF11O60813 436 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 LEFTY1O75610 366 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 GSRP00390 522 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 CTSLP07711 333 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 CD48P09326 243 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 GNSP15586 552 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 KDELR1P24390 212 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 SERPINB6P35237 376 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 DRD3P35462 400 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 CCNHP51946 323 aaPredicted RBP10.87□□□□□ -0.67
LINC00239-201ENST00000556973 ARHGAP8P85298 464 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 LMNB2Q03252 620 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 RAD51Q06609 339 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 DPYSL3Q14195 570 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 RFTN1Q14699 578 aaPredicted RBP10.87□□□□□ -0.67
LINC00239-201ENST00000556973 CYTH1Q15438 398 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 DUOXA1Q1HG43 343 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 MYLK3Q32MK0 819 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 ANKRD20A8PQ5CZ79 823 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 LRRC38Q5VT99 294 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 SLC23A3Q6PIS1 610 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms