RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RABEPKQ7Z6M1 372 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 UMODL1-AS1Q8N2C9 162 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 ZCCHC9Q8N567 271 aaKnown RBP14□□□□□ -0.17
SHMT2-219ENST00000555563 CHST14Q8NCH0 376 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 PIP4K2CQ8TBX8 421 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 GRIN3AQ8TCU5 1115 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 CTNNBL1Q8WYA6 563 aaPredicted RBP14□□□□□ -0.17
SHMT2-219ENST00000555563 HMCESQ96FZ2 354 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 CCDC114Q96M63 670 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 NCAPGQ9BPX3 1015 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 NUSAP1Q9BXS6 441 aaKnown RBP14□□□□□ -0.17
SHMT2-219ENST00000555563 KLC2Q9H0B6 622 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 MIR1-1HGQ9H1L0 117 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 ZWILCHQ9H900 591 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 NHEJ1Q9H9Q4 299 aaPredicted RBP14□□□□□ -0.17
SHMT2-219ENST00000555563 CAPN10Q9HC96 672 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 STAU2Q9NUL3 570 aaKnown RBP eCLIP14□□□□□ -0.17
SHMT2-219ENST00000555563 SUSD2Q9UGT4 822 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 IP6K2Q9UHH9 426 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 EIF2B4Q9UI10 523 aaKnown RBP14□□□□□ -0.17
SHMT2-219ENST00000555563 HPCAL4Q9UM19 191 aa14□□□□□ -0.17
SHMT2-219ENST00000555563 ZBTB32Q9Y2Y4 487 aaPredicted RBP14□□□□□ -0.17
SHMT2-219ENST00000555563 CXorf51AA0A1B0GTR3 108 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 FAM47DPA6NHR8 397 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 RNF103O00237 685 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 KDELR3O43731 214 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 FSBPO95073 299 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 SERPINF2P08697 491 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 H2AFZP0C0S5 128 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CHRNA3P32297 505 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 RECQLP46063 649 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 ZNF75DP51815 510 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 GEMIN4P57678 1058 aaKnown RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 YBEYP58557 167 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 SLC25A11Q02978 314 aaKnown RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 SLC20A2Q08357 652 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 SFSWAPQ12872 951 aaKnown RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 PARP15Q460N3 678 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 FAM46CQ5VWP2 391 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 KIAA0895LQ68EN5 471 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 TXNRD3NBQ6F5E7 133 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 NCEH1Q6PIU2 408 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 DPY19L3Q6ZPD9 716 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 H2AFVQ71UI9 128 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 ZNF354CQ86Y25 554 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CPNE8Q86YQ8 564 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 PCDH20Q8N6Y1 951 aaKnown RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 NPWQ8N729 165 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 TC2NQ8N9U0 490 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CEP76Q8TAP6 659 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 HSPH1Q92598 858 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 FAM131CQ96AQ9 280 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 BIRC7Q96CA5 298 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CCDC42Q96M95 316 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 TM6SF2Q9BZW4 377 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CTTNBP2NLQ9P2B4 639 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 UVRAGQ9P2Y5 699 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 SLC6A14Q9UN76 642 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 FARP1Q9Y4F1 1045 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-219ENST00000555563 SLCO1B1Q9Y6L6 691 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CACNA1AO00555 2505 aa13.99□□□□□ -0.17
SHMT2-219ENST00000555563 CEP250Q9BV73 2442 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 MYO1FO00160 1098 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 BUB1O43683 1085 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 TMCC1O94876 653 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 IGHV4-34P06331 123 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 TMEM253P0C7T8 217 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 RARAP10276 462 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 GNSP15586 552 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 ENGP17813 658 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 ERCC2P18074 760 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 MAPK8P45983 427 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 DNA2P51530 1060 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 CCNHP51946 323 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-219ENST00000555563 CNTN1Q12860 1018 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 SERINC3Q13530 473 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 DPYSQ14117 519 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 DPYSL2Q16555 572 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 AGBL4Q5VU57 503 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 OR2T34Q8NGX1 318 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 OR14C36Q8NHC7 312 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 TEKT4Q8WW24 435 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 MRFAP1L1Q96HT8 127 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 CELF6Q96J87 481 aaKnown RBP13.98□□□□□ -0.17
SHMT2-219ENST00000555563 RTKNQ9BST9 563 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 LRRC19Q9H756 370 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 OSGEPQ9NPF4 335 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 TMEM9BQ9NQ34 198 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 CWC15Q9P013 229 aaKnown RBP13.98□□□□□ -0.17
SHMT2-219ENST00000555563 IL36AQ9UHA7 158 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 WASF2Q9Y6W5 498 aa13.98□□□□□ -0.17
SHMT2-219ENST00000555563 A0A1B0GTW7 788 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ZSCAN5CA6NGD5 496 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 LRRC72A6NJI9 287 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 C10orf142B7Z368 130 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 H3BRJ5 948 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 KPNA3O00505 521 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 CDX4O14627 284 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 BCAT2O15382 392 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 SLC7A4O43246 635 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms