RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZNF567Q8N184 647 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 OR52K2Q8NGK3 314 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 INPP5DQ92835 1189 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 VPS50Q96JG6 964 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 ZYG11BQ9C0D3 744 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 STX18Q9P2W9 335 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 MYO5AQ9Y4I1 1855 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 LGR5O75473 907 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 TMCC1O94876 653 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 FKBP9O95302 570 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 GRK4P32298 578 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 PTPN9P43378 593 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 WDR4P57081 412 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 FKBP1BP68106 108 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 GRIK3Q13003 919 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 DUSP4Q13115 394 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 TEX44Q53QW1 395 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 ARHGAP15Q53QZ3 475 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 ADGRD1Q6QNK2 874 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 FKBP9P1Q75LS8 142 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 MIER2Q8N344 545 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 BPIFA1Q9NP55 256 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 TAS2R13Q9NYV9 303 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 UXTQ9UBK9 157 aaPredicted RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 SLC13A4Q9UKG4 626 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 PRR5-ARHGAP8B1AHC4 643 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 TLR5O60602 858 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 ARHGAP8P85298 464 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 FASTKQ14296 549 aaKnown RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 KCNA10Q16322 511 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 TTLL9Q3SXZ7 439 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 DCLRE1AQ6PJP8 1040 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 MYO1HQ8N1T3 1032 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 SERAC1Q96JX3 654 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 PNMA8BQ9ULN7 279 aaPredicted RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 PCDHB8Q9UN66 801 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 ARL5CA6NH57 179 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 FKTNO75072 461 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 MT-CYBP00156 380 aaPredicted RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 TFEBP19484 476 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 GALNT3Q14435 633 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 DNAJC14Q6Y2X3 702 aaPredicted RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 UNC5BQ8IZJ1 945 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 CD99L2Q8TCZ2 262 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 HDAC10Q969S8 669 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 FOPNLQ96NB1 174 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 SEPT3Q9UH03 358 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 PLLPQ9Y342 182 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 PBLDP30039 288 aaPredicted RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 CYP2C18P33260 490 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 UGT3A1Q6NUS8 523 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 RIPOR1Q6ZS17 1223 aa16.5■□□□□ 0.23
CUX1-213ENST00000549414 EMID1Q96A84 441 aaPredicted RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 PIWIL1Q96J94 861 aaKnown RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 SEMA4BQ9NPR2 832 aaPredicted RBP16.5■□□□□ 0.23
CUX1-213ENST00000549414 BPGMP07738 259 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 KPNA1P52294 538 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 SLC5A3P53794 718 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 LRRC74AQ0VAA2 488 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 NAB1Q13506 487 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 LRRC74BQ6ZQY2 392 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 CLNKQ7Z7G1 428 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 SLC22A9Q8IVM8 553 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 CMASQ8NFW8 434 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 NPLOC4Q8TAT6 608 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 FAM162AQ96A26 154 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 HNRNPABQ99729 332 aaKnown RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 CDH13P55290 713 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 MRPS22P82650 360 aaKnown RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 TAF10Q12962 218 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 RETSATQ6NUM9 610 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 TAC4Q86UU9 113 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 SCAMP5Q8TAC9 235 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 UPF1Q92900 1129 aaKnown RBP eCLIP16.49■□□□□ 0.23
CUX1-213ENST00000549414 QKIQ96PU8 341 aaKnown RBP eCLIP16.49■□□□□ 0.236e-15■■■■□ 22.1
CUX1-213ENST00000549414 WDR55Q9H6Y2 383 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 LGALS13Q9UHV8 139 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 NAV1Q8NEY1 1877 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 TJP1Q07157 1748 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 CCNT2O60583 730 aaKnown RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 MSX2P35548 267 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 ABL2P42684 1182 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 ZNF135P52742 658 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 TARBP2Q15633 366 aaKnown RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 DRICH1Q6PGQ1 229 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 LDB1Q86U70 411 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 FAM53CQ9NYF3 392 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 TUFMP49411 452 aaKnown RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 ENPEPQ07075 957 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 SCIMPQ6UWF3 145 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 ZNF467Q7Z7K2 595 aaPredicted RBP16.49■□□□□ 0.23
CUX1-213ENST00000549414 CD101Q93033 1021 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 CCT7Q99832 543 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 ACTR8Q9H981 624 aa16.49■□□□□ 0.23
CUX1-213ENST00000549414 TMEM247A6NEH6 219 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 ATG7O95352 703 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 IKBKEQ14164 716 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 MSS51Q4VC12 460 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 ANKS6Q68DC2 871 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 LRRC8BQ6P9F7 803 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms