RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 DHX35Q9H5Z1 703 aaKnown RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 C6orf106Q9H6K1 298 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 OSGEPQ9NPF4 335 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 GPATCH2LQ9NWQ4 482 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 UVRAGQ9P2Y5 699 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 PCSK1NQ9UHG2 260 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 ANAPC7Q9UJX3 599 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 SARDHQ9UL12 918 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 TPX2Q9ULW0 747 aaKnown RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 SLC6A14Q9UN76 642 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 ATXN2Q99700 1313 aaKnown RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 A0A1W2PP55 124 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 MEI4A8MW99 385 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 MYO1FO00160 1098 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 EEF2KO00418 725 aaKnown RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 KDELR3O43731 214 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 AKR1B10O60218 316 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 RNASEH2AO75792 299 aaKnown RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 H2AFZP0C0S5 128 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 GNSP15586 552 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 IL1R2P27930 398 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 CHRNA3P32297 505 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 NDST2P52849 883 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 INO80DQ53TQ3 878 aaPredicted RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 STPG1Q5TH74 334 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 DCAF12L1Q5VU92 463 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 RFX8Q6ZV50 586 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 H2AFVQ71UI9 128 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 RGL4Q8IZJ4 473 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 HDDC3Q8N4P3 179 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 TMIEQ8NEW7 156 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 OR2T34Q8NGX1 318 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 PIP4K2CQ8TBX8 421 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 ZNF564Q8TBZ8 553 aaPredicted RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 GANCQ8TET4 914 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 TEKT4Q8WW24 435 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 CASKIN2Q8WXE0 1202 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 CTNNBL1Q8WYA6 563 aaPredicted RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 MRFAP1L1Q96HT8 127 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 CCDC42Q96M95 316 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 CHP1Q99653 195 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 OMDQ99983 421 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 KDM4CQ9H3R0 1056 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 LRRC19Q9H756 370 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 NHEJ1Q9H9Q4 299 aaPredicted RBP12.11□□□□□ -0.47
YBX3-217ENST00000546164 LCMT1Q9UIC8 334 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 HPCAL4Q9UM19 191 aa12.11□□□□□ -0.47
YBX3-217ENST00000546164 NCOR2Q9Y618 2525 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 KNL1Q8NG31 2342 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 A0A1B0GTW7 788 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 LRRC72A6NJI9 287 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 RASA4BC9J798 803 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 CDX4O14627 284 aaPredicted RBP12.1□□□□□ -0.47
YBX3-217ENST00000546164 TM4SF5O14894 197 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 RASA4O43374 803 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 PRNPP04156 253 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 IGHV4-34P06331 123 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 CTSLP07711 333 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 TMEM253P0C7T8 217 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 TCF4P15884 667 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 RECQLP46063 649 aaPredicted RBP12.1□□□□□ -0.47
YBX3-217ENST00000546164 CCR5P51681 352 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 ZNF75DP51815 510 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 ADPRHP54922 357 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 SLC25A11Q02978 314 aaKnown RBP12.1□□□□□ -0.47
YBX3-217ENST00000546164 SERINC3Q13530 473 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 CARD16Q5EG05 197 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 AGBL4Q5VU57 503 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 AFMIDQ63HM1 303 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 KIAA0895LQ68EN5 471 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 DPY19L3Q6ZPD9 716 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 GAS2L3Q86XJ1 694 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 TC2NQ8N9U0 490 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 BIRC7Q96CA5 298 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 HMCESQ96FZ2 354 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 ORAI3Q9BRQ5 295 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 PACSIN1Q9BY11 444 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 KLC2Q9H0B6 622 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 TNKS2Q9H2K2 1166 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 CWC15Q9P013 229 aaKnown RBP12.1□□□□□ -0.47
YBX3-217ENST00000546164 FCF1Q9Y324 198 aaKnown RBP12.1□□□□□ -0.47
YBX3-217ENST00000546164 WASF2Q9Y6W5 498 aa12.1□□□□□ -0.47
YBX3-217ENST00000546164 CEP192Q8TEP8 1941 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 H3BRJ5 948 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 PLRG1O43660 514 aaKnown RBP12.09□□□□□ -0.47
YBX3-217ENST00000546164 BNIP3LO60238 219 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 MTA2O94776 668 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 PROSCO94903 275 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 GSRP00390 522 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 CFIP05156 583 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 RARAP10276 462 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 ENGP17813 658 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 ERCC2P18074 760 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 CD27P26842 260 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 MAOBP27338 520 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 MAN1A1P33908 653 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 CCNHP51946 323 aaPredicted RBP12.09□□□□□ -0.47
YBX3-217ENST00000546164 METAP1P53582 386 aa12.09□□□□□ -0.47
YBX3-217ENST00000546164 CCDC15Q0P6D6 951 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms